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Dear developers
I have an issue where I dont quite understand how isotopic distributions and average weight are calculated in OpenMS. Specifically I am looking at BSA using pyOpenMS:
```
>>> fr…
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example kinases:
GO:0033868 Goodpasture-antigen-binding protein kinase activity
GO:0004711 ribosomal protein S6 kinase activity
GO:0008384 IkappaB kinase activity
GO:0004687 myosin light chain…
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When running `funannotate compare` I get the following error message:
>[Mar 26 03:39 PM]: Running funannotate v1.3.0-beta
[Mar 26 03:39 PM]: Missing Dependencies: find_enrichment.py, mafft, raxmlHPC…
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Some genome sequences are stored as a composition of contigs. As a result, the initial assembly accession numbers will not be found in the Unipept database. One has to find the contigs first, and then…
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Currently our Tutorial is written in LaTeX to produce HTML and PDF output.
The code examples using the double-quote are fine in both HTML and PDF.
The code examples using the single-quote work f…
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### NTR: asparagine-type endopeptidase activity
Figure 6 in PMID:9065484 shows that legumain has endopeptidase activity and it cleaves specifically at asparaginyl bonds (-Asn-|-Xaa-) (EC 3.4.22.34)…
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The current definition for that term, "Catalysis of the reaction: 3-isopropylmalate = 2-isopropylmaleate + H2O.", is incorrect. Please update to the correct definition, "Catalysis of the reaction: (2…
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- "[KRHQSA]-[DENQ]-E-L>" (http://prosite.expasy.org/PDOC00014)
- ELM as "[KRHQSAP][DENQT]EL$" (http://elm.eu.org/elms/TRG_ER_KDEL_1)
- provide a choice of ER-retention motifs
- set reasonable defau…
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The query in this function should be directly accessible by defining a `relationship` variable called `children` in `bio2bel_expasy.models.Enzyme` such that the function
https://github.com/bio2bel/…
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Rather than writing complicated queries, the SQLAlchemy ORM allows for automatic access to properties like they are python objects. Therefore, the following code:
https://github.com/bio2bel/ec/blob…