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- [X] I have checked that this issue has not already been reported.
- [X] I have confirmed this bug exists on the latest version of scanpy.
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Hi,
Trying to run `scVI` to analyse my data u…
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Hello,
I apologize for bothering you but I was wondering if you could help me understand what I might be doing wrong.
I am following the [tutorial](https://pyscenic.readthedocs.io/en/latest/tut…
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Dear team, thank you for your wonderful software RISC. It is great!
However, I run umap and find the clusters crowd together and overlap (pic in the attachment)
And the code below (scRNA is my Seura…
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- [x ] I have checked that this issue has not already been reported.
- [x ] I have confirmed this bug exists on the latest version of scanpy.
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Hi, I am using scanpy rank gene function and al…
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I followed the directions in the README to build the socialsim_package, and all the preliminary steps seemed to work okay, until the last step. I think this is related to iGraph, which I think my col…
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Hi,
I use the easy mode to my data with code below:
```
#Set seed
r_seed=t_seed=n_seed=100
#Search for suitable resolution
#Set seed
random.seed(r_seed)
torch.manual_seed(t_seed)
np.rand…
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I have been having issues installing openproblems dependencies (scanpy, leigenalg, louvain, etc.) on my new M1 mac after updating homebrew. I wanted to leave this issue here in case this comes up agai…
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**Describe the bug**
Running `mu.pp.filter_obs` results in a `ValueError` with the latest AnnData
**To Reproduce**
```python
import scanpy as sc
import muon as mu
adata = sc.datasets.pbmc3k_…
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在gfl的README文件里说“conda install -y rdkit=2021.09.4=py39hccf6a74_0 -c conda-forge”
可是网上找不到rdkit2021.09.4的版本
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Hello, I am now using snRNAseq and scATACseq to reproduce the development trajactories reported in your great paper. But I encountered a problem that while I utilized the h5 formatted data output by c…