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muon
muon is a multimodal omics Python framework
https://muon.scverse.org/
BSD 3-Clause "New" or "Revised" License
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filter_obs is broken with latest AnnData
#146
grst
opened
1 month ago
0
CUPY memory allocation error when running MOFA
#145
wlason
opened
1 month ago
0
Discrete values after using the CLR normalization pt.pp.clr
#144
LucHendriks
opened
3 months ago
0
:bug: fix counts_fragments_features
#143
mbuttner
opened
4 months ago
1
WNN integration raise error while adding connectivities into mdata.obsp
#142
5tinzi
opened
4 months ago
0
Error with muon import
#141
Connorr0
closed
4 months ago
3
fixed reference to chromsome column in count_fragments_features
#140
Rushil-Chakra
opened
5 months ago
0
Invalid function call in independent component analysis (tl.ica)
#139
pavanvidem
opened
5 months ago
0
Test against pre-releases
#138
ivirshup
opened
5 months ago
0
Improve module import time
#137
rpadmanabhan
opened
6 months ago
1
scanpy 1.10 compat + PR CI
#136
ivirshup
closed
5 months ago
4
ImportError: cannot import name '_compute_connectivities_umap' from 'scanpy.neighbors'
#135
nbutyrate
closed
5 months ago
9
Fix #132
#134
SarahOuologuem
opened
6 months ago
1
Add fragment file path to a merged mudata object
#133
jolvhull
opened
7 months ago
1
mu.pl.scatter() fails when providing color
#132
SarahOuologuem
opened
7 months ago
0
dsb normalization results do not replicate results with the original DSBNormalizeProtein function in R
#131
javier-marchena-hurtado
opened
7 months ago
0
float overflow in dsb normalization
#130
javier-marchena-hurtado
opened
7 months ago
1
FIX: replace `scanpy.neighbors._compute_connectivities_umap` with `sc…
#129
milescsmith
closed
5 months ago
0
ValueError: could not broadcast input array from shape
#128
wariobrega
opened
10 months ago
2
How can I concatenate multiple `muon` data samples?
#127
danli349
closed
1 year ago
2
raw is also normalized with clr
#126
GirayEryilmaz
closed
1 year ago
4
Sum duplicate rows in muon.atac.tl.count_fragments_features
#125
benjamin-james
opened
1 year ago
0
Enable `gene_symbols` argument in mu.pl.embedding
#124
racng
opened
1 year ago
1
Batch correction for joint modality umap
#123
GirayEryilmaz
opened
1 year ago
0
MOFA error when data has been created using `axis=-1`
#122
dawe
opened
1 year ago
0
Is being developed?
#121
GirayEryilmaz
closed
1 year ago
2
"OptionError: 'Pattern matched multiple keys'" traceback in tutorial
#119
chris-rands
opened
1 year ago
0
OSError: Unable to synchronously create attribute (object header message is too large)
#118
zhouzhendiao
opened
1 year ago
1
Add NumFocus logo and text
#117
mikelkou
closed
1 year ago
0
Negative values after pt.pp.dsb
#116
ChaseTaylor939
opened
1 year ago
1
Error when writing .obsm of MuData object
#115
CarstenKnutsen
closed
1 year ago
1
:sparkles: Extend _l2norm for sparse input
#114
mbuttner
closed
1 year ago
3
MOFA on multiple groups with single view
#113
martinrohbeck
opened
1 year ago
1
Fixes scverse/muon#111
#112
russellgould
closed
1 year ago
3
Numpy IndexError in muon._core.tools.mofa
#111
russellgould
closed
1 year ago
2
Count fragment function counts duplicates
#110
lauradmartens
opened
1 year ago
0
Fix save color in MuData
#109
grst
closed
1 year ago
0
ac.pl.umap error message "ValueError: no types given"
#108
ad7115
closed
1 year ago
2
MOFA analysis with missing modalities and sparse matrices fails with `ValueError: setting an array element with a sequence`
#106
VPetukhov
closed
1 year ago
1
ac.tl.nucleosome_signal bug
#105
ad7115
closed
1 year ago
3
Incompatibilities with latest numpy
#104
grst
closed
1 year ago
0
Adopt cookiecutter-scverse template
#103
grst
opened
1 year ago
0
Cannot import muon: AttributeError: module 'anndata.compat' has no attribute 'Literal'
#102
havu73
closed
1 year ago
3
How should I save the `ac.pl.fragment_histogram()` plot?
#101
danli349
closed
1 year ago
1
Add scverse citation
#100
Zethson
closed
1 year ago
0
Make code that retrieves values from obs/X/layer/raw of the different modalities a public function
#98
grst
opened
1 year ago
0
Broken link: tutorial for cell type annotation
#97
yangjun9095
opened
1 year ago
0
Can't mix variables from obs and var in `pl.embedding`
#96
grst
closed
1 year ago
0
Confusing error message on missing key in `pl.embeddings`
#95
grst
closed
1 year ago
1
Tutorial Problem: MOFA_loadings does not work as it is not included in source code ? Also, Kernel Crashing when mu.pp.neighbors(mdata, key_added='wnn')
#94
maxwellkonnaris
closed
1 year ago
2
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