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Hi,
I've identified that using the `--save_resume` option causes a bug that makes it impossible for me to do predictions, due to the following error:
`Error: Disagreeing option values for '--l2_…
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Dear All,
I was analyzing a fluorescent tissue with 4 channels and after having performed Tissue detection followed by Watershed Cell detection, I realized that the detection measurement table does…
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Hi,
I am trying to run the classifier the same as shown in the directions on how to do this (https://github.com/qupath/qupath/wiki/Classifying-objects).
Using only 2 annotations, tumor and stroma.…
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I got `RuntimeError: cuda runtime error (59) : device-side assert triggered at /pytorch/aten/src/THC/generic/THCTensorCopy.c:70` when calculate the loss(loss = loss_fn(output, target)), something wron…
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Hello,
Instead of just displaying the ROIs of detections with their annotations (as color code), as it occurs by pressing the button "Export to ImageJ --> send region", it would be great to save th…
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I am not sure wether this is a bug of freec.
My input files are two sorted and base recalibration processed bamfiles, as control file and sample file.
The config file is
[general]
chrLenFile …
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Dear all, dear Sarah,
I'm running into an error using ChimPipe: The stage `[CHIMSIM]` fails with `[ERROR] Error running ChimSim`.
The full output looks like
```
../ChimPipe/ChimPipe.sh --fastq…
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As discussed we wanted to have atleast 3 regression datasets for testing our modules. Please put your suggestions in this thread.
My suggestion is to have House Price prediction dataset - https://w…
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Hi,I used gridss call single sample SV,now I got a vcf result.Could you tell me some filter criterion to filter SV.Thank you.
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Shifu;
Congrats on the paper in bioRxiv and thanks for all the great work on fastp. We've been working on improving the runtimes for somatic variant calling workflows and exploring quality and polyX …