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Hi,
I have a variety of PCoA plots as part of my QIIME output. However, if I right click the index.html files and tell them to open with Chrome, I get an error saying that Web GL is disabled. However…
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If you check "Scale coords by percent explained", the arrows in the biplots do not get resized.
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I am very excited about and grateful for this new project. I have been experimenting with canonical correlation analysis (skbio.maths.stats.ordination.cca) and the results look great. One thing I noti…
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It seems as though the positioning of the entire plot could be improved by giving an option for the user to not only adjust orientation of it, but also to pan it (I often feel there is too much blank …
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The weird taxa bubbles aren't on by default in the new beta diversity workflow. We should add those in, since they can be hidden if you don't want them.
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@josenavas, I'm working on some documentation of the I/O module, and have a question about the information in your example ordination file:
```
Eigvals2
0.0960.040
Proportion explained2
…
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Problem with having color and changing shapes with CCA, can't put constraint when typing species but I want the constraint to be on the samples.
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In the near future (before May 5) I plan on refactoring `plotROCRCurves` to use [plotROC](http://cran.r-project.org/web/packages/plotROC/index.html) which uses `ggplot2` instead of base graphics. This…
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Temporarily fixed by B. Ripley.
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Dear Phyloseq community,
I want to plot an ordination by phylum but also by sample variable using plot_ordination. My phyloseq object is as follows:
> asthmaRlogFilter
> phyloseq-class experiment-le…