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Hi I am trying to use giotto on cellranger output and the first step in using giotto on cellranger is aligning the cellranger images in giotto using a combination of updateGiottoImage and spatPlot in …
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(togl1) mohit@user-Default-string:~/mohit/TOGL$ poetry run topognn/train_model.py --model GNN --dataset MNIST
Traceback (most recent call last):
File "topognn/train_model.py", line 12, in
im…
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**Submitting author:** @ColemanRHarris (Coleman Harris)
**Repository:** https://github.com/ColemanRHarris/mxnorm
**Version:** v1.0.0
**Editor:** @osorensen
**Reviewers:** @askerdb, @tijeco
**Managing…
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Dear developers!
Are labels provided in the datasets taken from the Giotto clustering or they are the ground truth labels from the original publication?
e.g. https://github.com/RubD/spatial-dataset…
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# Brief description
The dev installation failed at the C++ compilation step.
# Steps to reproduce
After cloning the repo and moving into the root folder of the repo, I launched
```
pip inst…
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#### Description
It would be useful if the output from the static mapper graph could be saved to disk. Since we currently return a Plotly Figure object, it should be straight forward to save u…
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**Describe the bug**
When running line 8:
periodic_persistence.fit_transform_plot(y_periodic_embedded)
I get the following error in both Jupyter Notebook and Spyder 4.
`ValueError: cannot r…
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Hello,
Wanting to play around with the gravitational caustic project, i tried to run the program on the default image & a picture of mine. In both ARTIFACTS Appeared. So i guess i'ts not ready for…
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Hello, when i try the snippet below, i get "Error in dimnames(x)
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#### Description
Failing developer installation due to `Boost` library not being found by `Cmake`. Running latest Windows 10.
#### Steps/Code to Reproduce
Install Boost 1.72 in arbitrary …