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Currently the derivatives built for the Mosaiq-to-OMOP CDM lack a proper primary key, since these are just exports. Since these are actually staged in transient DBs, there may be a need for indexing t…
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Action | Code
-------|-------
Apply DQ Checks | The DI&H Repository
Apply Transformations | Formulas, Aggregations
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Join into LDS DataStore [Includes updating the DataStore version number] |…
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The cnext_drug_exposure script only pulls chemotherapy information. Shouldn't it also include immuno-therapy, hormone therapy, and possibly "other" therapy information per the OMOP CDM description of …
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I would think a transplant would be a procedure occurrence.
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Thanks for the notebooks! They're really helpful.
I don't have access to data in the OMOP CDM format yet and so my comments for now mostly relate to API clarity.
- `clmbr_create_info` (notebook …
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I'm having some difficulty following the documentation, so I'm wondering what the user is supposed to put in the CDM_Source table?
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I am trying to load vocabulary from Athena into a Postgres database. using
```
ETLSyntheaBuilder::LoadVocabFromCsv(connectionDetails = cd, cdmSchema = cdmSchema, vocabFileLoc = vocabFileLoc)
```
…
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OMOP is a standard that works with HL7 and other SDOs to support widescale multi-institutional representation of data. It may be a useful construct for representation of data to MONAI.
Details from…
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This R script is a proof of concept for two pieces of functionality that Andromeda might support in the future.
1. Extract a subset of the CDM or the full CDM into an Andromeda object
2. Execute A…
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When I ran the setting constraints script(
OMOP CDM postgresql constraints.txt) in pgAdmin of Postgresql 11, windows server2016 standard, it threw out the error message:
ERROR: there is no unique…