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### What is the bug?
When you configure an index with a search pipeline as below the
`GET /your_index/_search ` yields a 500 error - Null Pointer Exception.
It seems like by default the `_reind…
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As a TL I would to check the report consistency, identify and flag inconsistencies so that we can improve confidence in the report.
**Acceptance Criteria**
- [ ] Identify report rows where the m…
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Hello,
We are starting with the study of resistance genes, and we are using EPI2ME Desktop and we were very happy because it provided a lot of information very useful. However, if we comparing EPI2ME…
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Hi, thank you for developing this pipeline. We are particularly interested in the MGE and AMR annotation part, as they help uncover the associations between them. However, when we attempted to run the…
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Hi @rpetit3
We just tried to analyze only the Nanaopore reads, but seems it skipped the `CALL_VARIANTS` part.
May I ask it is possible to include the `CALL_VARIANTS` analysis in the pipeline wi…
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Hi
It is about getting Abricate output to record the BLAST bit scores. Currently we are engaging with the European Food Safety Authority (EFSA) on guidelines for WGS based reports, and they were w…
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https://bactopia.github.io/tutorial/
I'm working through the tutorial.
```
# https://bactopia.github.io/tutorial/#build-datasets
bactopia datasets --ariba "vfdb_core,card" --species "Staphyloc…
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Hi everyone. We are seven students from Sydney Grammar School (Harry, James, Oliver, Alex , Hugo, Duncan and Kieran) and we are hoping to contribute to the Open Source Malaria Project. We'd like to do…
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# Open Grant Proposal: Decentralized Antimicrobial Resistance Data Ecosystem on Filecoin
**Project Name:** Decentralized AMR Data Ecosystem on Filecoin
**Proposal Category:** Applications
**I…
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This is a feature request that should not impact current `readr`'s behaviour, but that would open up the possibility of enhancement from third-party packages (cc @edzer).
## Motivation
Consider …