-
Currently the formatting of the help messages (defined via the leading docstrings at the start of each script in `augur/*.py`) is not respected by `augur --help`. We should improve this which will en…
-
Quest: [Resident Danger](https://www.wowhead.com/quest=13945/resident-danger)
NPC: [Gnarlpine Augur](https://www.wowhead.com/npc=2011/gnarlpine-augur); [Gnarlpine Shaman](https://www.wowhead.com/npc=…
-
### Current Behavior
```sh
$ augur refine --tree results/tree_raw.nwk --alignment results/aligned.fasta --metadata data/metadata.tsv --output-tree results/tree.nwk --output-node-data resu…
-
Prompted by https://github.com/nextstrain/pathogen-repo-guide/pull/54#issuecomment-2229193810
Taking a closer look at the use of `csvtk` in the nextclade.smk
https://github.com/nextstrain/pathog…
-
Need to determine how to key the data.
```
https://api.augur.io/v1/user?key=&twitter_handle=
```
chuwy updated
4 years ago
-
Currently, Augur is pinned to pandas version 1:
https://github.com/nextstrain/augur/blob/1694a3fe1f2e4271849120ee08b29cb8286dc1fa/setup.py#L64
There have been numerous requests with good reason …
-
### Current Behavior
I get an error that's not very helpful when passing invalid `exclude-where` args, in my case:
```
--exclude-where outbreak!=hMPXV-1 "coverage650" QC_rare_mutations!=good
``…
-
hi, we test augur using our data. the code as follows:
seurat.obj
-
There is an issue with long running message collection first jobs, where they sometimes do not finish for large repos due to the following error:
```bash
Traceback (most recent call last):
File "/…
-
## Description
[Originally discussed in Slack](https://bedfordlab.slack.com/archives/C2G8C5LUD/p1643305652009300?thread_ts=1643246971.008600&cid=C2G8C5LUD) and [in GitHub comments](https://github.c…