neurorestore Augur issues

neurorestore / Augur

Cell type prioritization in single-cell data

MIT License

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issues

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seurat v5 compatibility issues

#33 onetaoneryan opened 3 months ago
1
Error in if (!(layer %in% slotNames(x = object))) { : argument is of length zero

#32 Eunice0519 opened 4 months ago
1
Question about comparing AUCs within the same Augur object

#31 alicedini opened 7 months ago
2
Increase robustness of cell type prioritization

#30 tkapello opened 10 months ago
5
Question about select_variance()

#29 kleejin opened 10 months ago
1
option to exclude certain genes in calculate_auc

#28 kaizen89 opened 11 months ago
1
error running single cell ATAC-seq data

#27 jhong26 opened 1 year ago
1
What fraction of cells per celltype is recommended to use as subsample_size?

#26 kaizen89 opened 1 year ago
2
Precision is undefined in this case, and `NA` will be returned.

#25 Aljovic opened 1 year ago
1
the results of Augur

#24 crystal0721 opened 1 year ago
10
the error of Augur

#23 crystal0721 opened 1 year ago
2
Does Augur run with yardstick (1.1.0)?

#22 amissarova opened 1 year ago
1
What do you recommend for single cell RNAseq data: counts, normalized counts in log scale, other?

#21 apeleraux opened 1 year ago
5
Feature_perc

#20 amissarova opened 1 year ago
7
Effect of cell type abundance on AUC values

#19 hayfre opened 2 years ago
1
How could I access the AUC per cell?

#18 sanchezy opened 2 years ago
1
Error in plot_umap

#17 sanchezy opened 2 years ago
4
Using Augur with possible confounding effects

#16 zroger49 closed 2 years ago
5
Python adaptation - cross advertising?

#15 Zethson closed 1 year ago
6
Very small number of trees affect on AUC and comparing AUC across experiments

#14 vincentrose88 opened 2 years ago
6
Fix wrong sc object used and deprecation warning in plot_umap

#13 ycl6 closed 2 years ago
0
Feature importance score

#12 gaelcge opened 2 years ago
3
plot_umap error and problem with mutate() column metrics

#11 hwenxi closed 2 years ago
4
Input for batch-corrected data using Harmony

#10 danshu opened 3 years ago
2
Public datasets in Seurat objects

#9 zhangzehao626 closed 3 years ago
2
Input the raw matrix or HVG matrix?

#8 storytc closed 3 years ago
0
sparseMatrixStats package install error

#7 izzetagoren opened 3 years ago
0
A stubborn error

#6 JustMoveOnnn opened 3 years ago
16
Different conditions in different platform ?

#5 ahy1221 opened 3 years ago
4
Column 'labels' is NULL

#4 thugib opened 3 years ago
2
More than two conditions?

#3 TheSingleCell opened 3 years ago
3
Error/Output interpretation help for demonstration dataset

#2 allie-burns opened 3 years ago
2
single cell datasets

#1 elimereu opened 4 years ago
8