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Steps to reproduce:
1. https://discovery.biothings.io/portal/niaid
2. Click on Datasets on right nav bar (routes to https://discovery.biothings.io/dataset?guide=/guide/niaid)
3. Clicking Back but…
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In https://github.com/biothings/biothings_explorer/issues/774, we migrated to the new v3 Monarch API (using the [/association endpoint](https://api-v3.monarchinitiative.org/v3/docs#/association/_get_a…
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I'm trying to query MyChem's drugcentral info and only keep `drugcentral.bioactivity` objects with the matching action_type value (POSITIVE MODULATOR). So I'm setting the parameter `jmespath` to `drug…
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I've heard that `jmespath` should be used in replacement of `list_filter` for BioThings API querying ([internal lab Slack thread](https://suwulab.slack.com/archives/CC19LHAF2/p1694708538684359?thread_…
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When running with `es.biothings.io:9200`, `test_others.py` will fail on
```txt
query?q=_exists_:gnomad_genome&size=0&assembly=hg38
```
The root cause is ES search timeout. The original config…
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API URL: https://biothings.ncats.io/text_mining_targeted_association
Parser GitHub URL: https://github.com/UCDenver-ccp/text_mining_targeted_association
Git branch/commit: Master 969da7c
No. Docume…
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only 1559 / 2382 gene-records have the omim disease ID field gene2phenotype.disease.disease_mim: https://pending.biothings.io/ebigene2phenotype/query?q=_exists_:gene2phenotype.disease.disease_mim
o…
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Website: https://www.ncbi.nlm.nih.gov/research/pubtator3/
FTP: https://www.ncbi.nlm.nih.gov/research/pubtator3/ (We are most interested in [relation2pubtator3.gz](https://ftp.ncbi.nlm.nih.gov/pub/lu/…
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https://github.com/NCATS-Tangerine/translator-api-registry/blob/master/pfocr/smartapi.yaml#L758
I plan to swap in `pfocrURL` to replace `figureURL` as the `ref_url` in the registry (once we've upda…
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1. Integrate OpenAPI spec generation with https://github.com/zcqian/biothings.api/blob/openapi/biothings/web/openapi/contexts.py
2. Support forgiving argument processing, for example, for a number li…