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Datasources in myvariant.io may contain large files to download (e.g. `dbsnp` release 155 has 380GB). Due to various reasons (like FTP connection issues), the download may be incomplete, leading error…
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We've noticed an issue, where BTE as Service Provider (queried by other ARAs through the team-specific endpoint) returns a status 500 response with `TypeError: item.upstream_resource_ids?.forEach is n…
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Due to how ES stores objects, a query of `q=firstName:Marco AND lastName:Zhou` on
```
author:[
{firstName: Jerry, lastName: Zhou},
{firstName: Marco, lastName: Cano}
]
```
would inappropriatel…
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The QotM identified [PharmGKB](https://www.pharmgkb.org/), [RaMP DB](https://rampdb.nih.gov/), [Rhea-DB](https://www.rhea-db.org/), and [KEGG Pathway DB](https://www.genome.jp/kegg/pathway.html) as po…
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This timed out after 6 hours:
https://github.com/biothings/bte_regression_test/actions/runs/779366292
Possible solutions:
1. get access to longer time limits
2. use batch mode when querying API
…
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Website: https://www.ncbi.nlm.nih.gov/research/pubtator3/
FTP: https://www.ncbi.nlm.nih.gov/research/pubtator3/ (We are most interested in [relation2pubtator3.gz](https://ftp.ncbi.nlm.nih.gov/pub/lu/…
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This is a snippet from https://github.com/biothings/biothings_explorer/blob/master/jupyter%20notebooks/TIDBIT%2002%20Finding%20New%20Uses%20for%20Existing%20Drugs%20to%20Treat%20Parkinson%E2%80%99s%20…
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## 1. Problem
Involved method: [analyze_diff](https://github.com/biothings/biothings.api/blob/master/biothings/hub/datarelease/publisher.py#L1748)
Code example:
```python
from biothings.util…
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We need tests for all the user-facing endpoints.
Documentation on query endpoint: https://docs.mygeneset.info/en/latest/doc/query_service.html#geneset-query-service
Annotation endpoint: https://do…
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Query: What drugs may treat conditions related to:[Hypothyroidism](https://monarchinitiative.org/MONDO:0005420)?
https://ui.test.transltr.io/main/results?l=Hypothyroidism&i=MONDO:0005420&t=0&r=0&q=68…