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I've been using chunk compressed Zarr arrays for some neuroscience image processing tasks, and it's been great so far. However, JPEG2000 might perform better than lz4 or Zstd for my images. I'd like t…
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如果我不适用tools里的big_to_small_patching.py，而是直接使用CLAM创建LEVEL=1的patching，那么SIZE应该设置为1024吗？并且，在readme里的命令中，特征提取部分--color_norm参数好像并没有定义
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您好，按照您的流程，我进行了代码的复现，具体步骤如下：
`python create_patches_fp.py --source /homeb/junjianli/data/CAMELYON16/all_slide/40x --save_dir /homeb/junjianli/HAG-MIL-master/feature/camelyon_patches_256_level_2 --pa…
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Dear authors,
What is pretraining distribution of CTransPath and CHIEF? Is new CHIEF CTransPath model the same as previous one in Medical Image Analysis?
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Hi, i was trying to reproduce the results u have shown with CAMELYON 16 dataset. i have used the configuration u have provided in 0-extract_patches to run with create_pathes_fp.py
```
seg_level,sth…
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Thank you for you great work. I want to visualize the results of MHIM-MIL through vis.ipynb, but I couldn't find json files required to run the notebook. It would be very helpful sharing the .json fil…
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Hi, I am trying to extract C16 raw patches using hs2p with below configurations:
```
csv: 'camelyon16.csv' # path to the .csv / .txt file containing slides paths
output_dir: '/vast/WSI_datasets…
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### dask-image example datasets
We need some good example data for tutorials with dask-image.
This issue is a place for discussion and suggestions. If you have links, add them here!
Ideally th…
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i have run hovernet on image `test_001.tif` from CAMELYON16, and there are empty regions between inference tiles. please see the attached image. i was the same command as https://github.com/vqdang/hov…