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kaiko-ai
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eva
Evaluation framework for oncology foundation models (FMs)
https://kaiko-ai.github.io/eva/
Apache License 2.0
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Change learning rate for segmentation configs to `0.002`
#722
nkaenzig
opened
9 hours ago
0
Add `TorchHubModel` model wrapper
#721
nkaenzig
closed
4 days ago
0
Add model wrapper to load models from `torch.hub`
#720
nkaenzig
closed
4 days ago
0
Replace `GeneralizedDiceScore` by `DiceScore` & fix class-wise metrics
#719
nkaenzig
opened
5 days ago
0
Fix classwise dice metrics
#718
nkaenzig
opened
5 days ago
0
Update pdm-project/setup-pdm digest to b2472ca
#717
renovate[bot]
opened
5 days ago
0
Relax `nibabel` version dependency
#716
nkaenzig
closed
1 week ago
0
Relax `eva`'s dependency requirements
#715
nkaenzig
closed
1 week ago
0
Relax dependency requirements
#714
nkaenzig
closed
1 week ago
0
Add support for dataloader samplers
#713
nkaenzig
opened
1 week ago
0
Add support for label efficiency evals
#712
nkaenzig
opened
1 week ago
0
Update leaderboard with new segmentation results & adding new FMs
#711
nkaenzig
closed
1 week ago
0
Remove redundant line in `DiceLoss`
#710
nkaenzig
opened
1 week ago
0
Reduce classes of `TotalSegmentator2D` dataset
#709
nkaenzig
opened
2 weeks ago
0
Reduce classes of total segmentator dataset
#708
nkaenzig
opened
2 weeks ago
0
Add save submodule plugin
#707
ioangatop
opened
3 weeks ago
0
Add IO plugin to save a submodule
#706
ioangatop
opened
3 weeks ago
0
Add decompression preprocessing step to `TotalSegmentator2D` for more efficient slice loading
#705
nkaenzig
closed
3 weeks ago
0
Slow dataloader iterations for `TotalSegmentator2D` dataset
#704
nkaenzig
closed
3 weeks ago
0
Update `consep` & `monusac` online configs to use `ConvDecoderWithImage`
#703
nkaenzig
closed
1 day ago
0
Add HEROHE downstream task (Her2)
#702
roman807
opened
3 weeks ago
0
Bump version to `0.1.2`
#701
nkaenzig
closed
3 weeks ago
0
support MedMNIST dataset baselines
#700
ioangatop
opened
4 weeks ago
0
Add `ConvDecoderWithImage` decoder
#699
nkaenzig
closed
1 month ago
0
Add support for including original image to segmentation decoder forward pass
#698
nkaenzig
closed
1 month ago
0
Add phikon-v2 to registry
#697
nkaenzig
closed
1 month ago
0
Add Virchow2 model to registry
#696
nkaenzig
closed
1 month ago
0
Add `phikon-v2` model to leaderboard
#695
nkaenzig
closed
1 month ago
0
Add Virchow2 model to leaderboard
#694
nkaenzig
closed
1 month ago
0
Fixed metrics device condition for `mps`
#693
nkaenzig
closed
1 month ago
0
Remove leaderboard table from `README.md`
#692
nkaenzig
closed
1 month ago
0
Update `metrics_device` to use `cpu` when running on `mps`
#691
nkaenzig
closed
1 month ago
0
Switch from `SGD` optimizer to `AdamW` for patch classification tasks
#690
nkaenzig
closed
1 month ago
1
[TOBECLOSED]
#689
pasqualesalza
closed
1 month ago
0
Set default metrics device to cpu
#688
nkaenzig
closed
1 month ago
0
CI/CD update
#687
ioangatop
opened
1 month ago
0
Add `CrossEntropyLoss` and `DiceCELoss` wrappers with support for class weights
#686
nkaenzig
closed
1 month ago
0
CI/CD update
#685
ioangatop
opened
1 month ago
0
Add support for weighted loss functions
#684
nkaenzig
closed
1 month ago
0
Make metrics device configurable through `METRICS_DEVICE` env variable
#683
nkaenzig
closed
1 month ago
0
Add starplot leaderboard script to tools
#682
roman807
closed
1 month ago
0
Add starplot leaderboard script to tools
#681
roman807
closed
1 month ago
0
Add `N_DATA_WORKERS` env variable to make dataloader `num_workers` configurable
#680
nkaenzig
closed
1 month ago
0
Make `num_workers` configurable through env variable
#679
nkaenzig
closed
1 month ago
0
Update class indices in `MoNuSAC` to make compatible with generalized dice metric
#678
nkaenzig
closed
1 month ago
0
Low GPU utilisation for segmentation tasks
#677
nkaenzig
closed
1 month ago
0
Increase `N_PATCHES` from `500` to `1000` for `camelyon16_small.yaml`
#676
nkaenzig
closed
1 month ago
0
Update wntrblm/nox action to v2024.10.09
#675
renovate[bot]
opened
1 month ago
0
Add option to WSI datasets to save patch coordinates
#674
nkaenzig
closed
1 month ago
0
No access to patch coordinates
#673
nkaenzig
closed
1 month ago
0
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