kaiko-ai eva issues - Githubissues

kaiko-ai / eva

Evaluation framework for oncology foundation models (FMs)

https://kaiko-ai.github.io/eva/

Apache License 2.0

50 stars 2 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Change `overwrite` default value to True in `EmbeddingWriter`

#558 nkaenzig opened 20 hours ago
0
`overwrite=False` in `EmbeddingsWriter` doesn't work

#557 nkaenzig opened 21 hours ago
0
Speed up segmentation metrics calculation

#556 ioangatop opened 1 day ago
0
Fix normalisation in `ResizeAndClamp` transform

#555 ioangatop closed 1 day ago
0
Wrong normalisation in `ResizeAndClamp` transform

#554 ioangatop closed 1 day ago
0
Add `BCSS` segmentation dataset

#553 ioangatop opened 6 days ago
0
Add `PAIP2019` segmentation dataset

#552 ioangatop opened 6 days ago
0
`EncoderWrapper` model and fixes for segmentation tasks

#551 roman807 closed 6 days ago
1
Add visiontransformer-wrapper for segmentation tasks

#550 roman807 opened 6 days ago
0
Add `MoNuSac` segmentation dataset

#549 ioangatop closed 6 days ago
0
add online-config for consep

#548 roman807 closed 1 week ago
0
Add `CoNSeP` dataset with patching

#547 nkaenzig closed 6 days ago
0
Add MoNuSAC dataset

#546 ioangatop closed 6 days ago
0
make sure multiwsidatasets are validated (updated)

#545 roman807 closed 1 week ago
0
175v2 add consep segmentation dataset

#544 roman807 closed 1 week ago
1
update leaderboard with complete reruns

#543 roman807 closed 2 weeks ago
0
Add support for WSI-level classification

#542 roman807 closed 1 week ago
0
Allow head model as `dict` and parse it as object in `configure_model`

#541 ioangatop closed 2 weeks ago
0
Update dependency jsonargparse to v4.30.0

#540 renovate[bot] opened 2 weeks ago
1
updated camelyon16 configs to save embeddings less frequent

#539 roman807 closed 2 weeks ago
0
532 update leaderboard results with slide level tasks

#538 roman807 closed 2 weeks ago
0
Fix memory leak embeddingswriter

#537 roman807 closed 3 days ago
0
Update actions/checkout digest to 692973e

#536 renovate[bot] opened 3 weeks ago
1
Support the full `TotalSegmentator2D` dataset

#535 ioangatop closed 3 weeks ago
0
Rename `DOWNLOAD` env var to `DOWNLOAD_DATA`

#534 ioangatop closed 3 weeks ago
0
Rename `DOWNLOAD` to `DOWNLOAD_DATA` and add env var to online configs as well

#533 ioangatop closed 3 weeks ago
0
Update leaderboard results with slide-level tasks

#532 roman807 closed 3 days ago
0
Updated documentation with new datasets and leaderboard

#531 roman807 closed 3 weeks ago
0
Support the full `TotalSegmentator` dataset

#530 ioangatop closed 3 weeks ago
0
Add DigestPath2019 dataset

#529 ioangatop opened 3 weeks ago
0
update documentation with new datasets and leaderboard

#528 roman807 opened 3 weeks ago
0
update 360-aggregated-feature before PR to main

#527 roman807 closed 3 weeks ago
0
reload head every fit run

#526 roman807 closed 2 weeks ago
1
Minor fixes in `SemanticSegmentationModule`

#525 ioangatop closed 3 weeks ago
0
Minor fixes in `SemanticSegmentationModule` of 402

#524 ioangatop closed 3 weeks ago
0
Add `ModelCheckpoint` and `EarlyStopping` in `TotalSegmentator2D` task

#523 ioangatop closed 3 weeks ago
0
Add `ModelCheckpoint` and `EarlyStopping` in `TotalSegmentator2D` task

#522 ioangatop closed 3 weeks ago
0
Fix SemanticSegmentationLogger callback write frequency

#521 ioangatop closed 3 weeks ago
0
Fix `SemanticSegmentationLogger` write frequency

#520 ioangatop closed 3 weeks ago
0
Minor updates on semantic segmentation tasks

#519 ioangatop closed 3 weeks ago
0
Minor fixes and updates on Semantic Segmentation tasks

#518 ioangatop closed 3 weeks ago
0
Support semantic segmentation downstream evaluation tasks

#517 ioangatop closed 1 week ago
0
Add licence print and env var for download in `TotalSegmentator2D`

#516 ioangatop closed 3 weeks ago
0
Add licence print and env var for download in `TotalSegmentator2D`

#515 ioangatop closed 3 weeks ago
0
support setting download as env-variable

#514 roman807 closed 3 weeks ago
0
Parametrize environment variable for data download

#513 roman807 closed 3 weeks ago
0
make sure multiwsidatasets are validated

#512 roman807 closed 1 week ago
1
475 define slide level evaluation protocol

#511 roman807 closed 3 weeks ago
0
402 aggregated feature segmentation downstream evaluation tasks

#510 ioangatop closed 4 weeks ago
0
Update 402 with later main

#509 ioangatop closed 3 weeks ago
0