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Hi,
Thank for your practical tool!
I am working on single cell ATAC-seq data and I would like to classify the cells based on their cell types. It seems the only single cell ATAC seq dataset with g…
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fastai 2.7.14
fastcore 1.5.29
**Describe the bug**
When producing some exception from a plain assert, the exception is modified by fastai, but the modify_exception call introduces another error, …
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model = MultiLabelClassificationModel('t5', 't5-base', ...)
gives
KeyError Traceback (most recent call last)
[](https://localhost:8080/#) in ()
----> 1 model =…
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Project UUID: a9c022b4-c771-4468-b769-cabcf9738de3
Project Title: Comparison, calibration, and benchmarking of high-throughput single cell RNA-Seq techniques for unbiased cell-type classification
Pr…
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To support custom pre/post-processing, but also to allow composition of models, (together with @FynnBe and @constantinpape) we propose the follow workflow spec.
The idea is to define a list of ste…
oeway updated
2 years ago
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## When
Validating VocabolariControllati/classifications-for-transparency/transparency-obligation/transparency-obligation.csv
## I expect
- no error
- id_obbligo is a string
## instead…
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Type: Bug
## Issue Description ##
I'm constantly getting this error after opening a project.
## Steps to Reproduce ##
Open C# project.
## Expected Behavior ##
Should work without error
## Actua…
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## Actions
- [ ] Get an exhaustive list of all the relations that we want to extract, e.g.
- `(GENE, is-in, BRAIN_REGION)`
- `(GENE, is-in, CELL_COMPARTMENT)`
- ...
- [ ] Define number o…
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This is a great tool! Thank you for development. Can you please generate/provide similar T subset resources for mouse datasets? It will be greatly useful as many labs including ours generate CITE-seq …
nroak updated
2 months ago
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**A potential design:**
1. add an argparse option for `--num-layers-override` in infer.py https://github.com/NVIDIA/bionemo-framework/blob/main/sub-packages/bionemo-geneformer/src/bionemo/geneformer/s…