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Hello!
I am having troubles installing isoCirc on the cluster without sudo access. The cluster system administrator tried to install it as well, but faced similar problems (both with pip install is…
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###Description of the bug
From what I understood from the error messages the maximum input length of this pipeline is at 650 bases per read.
For reads longer 650 the RNA sequence seems to be cro…
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- DCC error again...
```
+ DCC @/vf/users/Ziegelbauer_lab/circRNADetection/circRNA_daq_v0.8.x/samples_3_230408/results/LEC_24hpi_R1/DCC/samplesheet.txt --temp /lscratch/62408434/ca01d743-6c80-4ee4-…
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### Description of the bug
Nextflow is an excellent standardized pipeline tool and helps me a lot.
When I use the `circrna`, it always report error:
```
Execution cancelled -- Finishing pendin…
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### Description of the bug
CIRIquant step can't find BWA index files.
This behaviour is seen regardless if reference files are fetched from AWS or locally assigned.
### Command used and terminal o…
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Hello,
I have been trying to run isocirc on the given test data (command: isocirc -t 1 read_toy.fa chr16_toy.fa chr16_toy.gtf chr16_circRNA_toy.bed output) but am running into the following error. …
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as mentioned in https://github.com/uclahs-cds/project-MissingPeptides-Method/issues/254#issuecomment-1811354683
summarizeFasta doesn't work with combination sources it seems? I'm getting this error…
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## Check Documentation
I have checked the following places for your error:
- [ ] [nf-core website: troubleshooting](https://nf-co.re/usage/troubleshooting)
- [ ] [nf-core/circrnasponging pi…
Cesnl updated
8 months ago
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The following detection methods have been suggested so far:
- [x] #7
- [x] #6
They should run in parallel to the existing circExplorer.
After that we should
- [ ] Perform majority vote
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