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Dear Mazter_mine Team
Hello, I'm analyzing reads fragmented with mazF using this mazter_mine pipeline.
Thank you for developing such a convenient and wonderful tool!
I'm analyzing multiple rea…
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Add a search to retreive all signal peptides. None urgent
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The regular expression in the mzid export for trypsin right now (v2024.01) is exported as
`((?<=[KR]) (?!P))`
This though is incorrect, as it contains a blank and thus does not match the cleava…
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Hi,
Would it be possible to add a converter for Protein Prospector output?
Cheers!
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### Setup
I am reporting a problem with Biopython 1.78, Python version, and operating
system as follows:
import sys; print(sys.version)
3.8.3 (default, Jul 2 2020, 16:21:59)
[GCC 7.3.0]
>>>…
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- [x] What do we have annotated as "residue extensions"
- [ ] Curators review existing residues on catalytic activities- possibly remove?
See https://github.com/pombase/curation/issues/3729
-…
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I am trying to compare results between library-free search
[report.pg_matrix.tsv.txt](https://github.com/vdemichev/DiaNN/files/11439840/report.pg_matrix.tsv.txt)
```
diann.exe --f "C:\Users\anim…
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This Issue is for discussion and tracking of mechanism of action experiments for series 2. We are currently in the process of planning the details of the first experiments and will update accordingly.
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Hi
I am just starting to use DIA NN. It has been producing great results for us when we did cell lysate.
I recently did a project with in vitro phosphorylation. I have 4 samples. A and B were mo…
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Hi,
Thank you for the great tool!
When running the same analysis one two different computers the number of identified proteins changed a lot. This trend was observed repeatedly, one computer al…