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Hi,
Thank you very much for the development of this tool. I am facing an issue regarding the output format.
Here is the cmd line which I used:
HiCLift --input $file.cool --input-format coole…
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As seen from our implementation for the MNT4/6-753, Poseidon is significantly improved using MDS matrices supporting short Montgomery multiplication: The entries of such matrices $M=(m_{i,j})$ are su…
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I started working on #5030, but it didn't take long before I started being annoyed by the amount of code duplication and inconsistencies in the implementation of permission matrices in different modul…
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Currently, we apply all dampings to local contact matrices. If and to which extent these same dampings should be applied to edges should be discussed further. It is activated in https://github.com/DLR…
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Hello,Professor
I have produced a .matrix file and a .bed file after running` Hic-Pro`. Then I runned the R package `hicpro2bedpe` to convert into the sparse matrices. But when I run the `calder.R`:…
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# Scenario 1: Calibrating models and estimating causal effects
In this scenario, we are interested in determining the effects of masking and social distancing on Covid-19 infections using simulated…
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Hello, there are some problems when I use it, there should be some problems with my cool file, I used Juicer to generate Hic file and then converted it into cool file, but NOW I have such errors.
r…
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I think the different packages fill different niches and it's good to keep them all alive (especially since they are already on CRAN).
However, we should make sure that they play well together and …
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Good evening everyone,
I am writing here following Adam Tenderholt advice, whom I contacted, about a possible problem of cclib concerning the parsing of alpha and beta density matrices (construction …
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Change from forM_ to numLoop causes some problems since "forM_ [1..0] ..." executes zero times but "numLoop 1 0 ..." will cause an infinite loop. For example "joinBlocks (identity 1, identity 0, ident…
haBuu updated
10 years ago