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XiaoTaoWang
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NeoLoopFinder
A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
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Pickle has an incompatible dtype
#66
AudreyBaguette
closed
1 month ago
1
segment-cnv and plot-cnv issue
#65
BERICP01
opened
2 months ago
0
genome
#64
wangzhaohui-001
opened
2 months ago
1
ploidy parameters and biological replicates choose for Down Syndrome
#63
linfanxiao
closed
3 months ago
2
The KeyError: 'weight'
#62
biosciences
opened
4 months ago
1
Getting a bug while running vis.plot_genes()
#61
walidabualafia
opened
5 months ago
1
problems in pyensembl_download_cache
#60
ecesukilinc
closed
7 months ago
0
genes overlapping in visualization
#59
ninashenker
opened
8 months ago
2
the removal of background signals in the plot?
#58
xunchen85
opened
8 months ago
0
neoloop-caller running error
#57
xunchen85
closed
8 months ago
1
what 's the version of pomegranate?
#56
HanwenZhu98
opened
9 months ago
1
segment-cnv error
#55
abhijitcbio
opened
10 months ago
2
How to plot region not in assembly
#54
Josephinedh
opened
1 year ago
2
Labels overlap with filter
#53
iagooteroc
opened
1 year ago
0
Can I use NeoLoopFinder for other organisms?
#52
xinghua1001
opened
1 year ago
1
juicer v2 .hic file as the input?
#51
xunchen85
closed
1 year ago
1
Log2 Copy Number
#50
Xieeeee
closed
1 year ago
2
Missed assembled translocations in smaller bins
#49
xunchen85
closed
1 year ago
3
Can we use it with a customized reference genome
#48
xunchen85
closed
1 year ago
4
segment-cnv terminated without notice and results.
#47
Xieeeee
closed
1 year ago
4
NeoLoopFinder for Micro-C
#46
PinpinSui
opened
1 year ago
4
Numpy.int AttributeError
#45
TeoSakel
opened
1 year ago
1
Python version in installation commands
#44
kuba11
closed
1 year ago
2
neoloop-caller IndexError
#43
zzhoujialu
closed
1 year ago
6
Invalid interval bounds with chr prefix already
#42
zzhoujialu
closed
1 year ago
2
Number of Redundant Candidates in assemble-complexSVs
#41
alobo4
closed
1 year ago
4
neoloop-caller error
#40
ldyyzhangh
closed
1 year ago
2
Color of interaction matrix
#39
stanleyrc
opened
1 year ago
2
generating figure has error
#38
yangfeizZZ
closed
1 year ago
0
The output of neoloop-caller is empty
#37
yangfeizZZ
closed
1 year ago
0
neoloop-caller failed
#36
yangfeizZZ
opened
1 year ago
3
neoloop-caller has some error
#35
yangfeizZZ
closed
1 year ago
2
download pre-trained Peakachu models
#34
Bo-UT
opened
1 year ago
8
visualization of CNV normalization in higlass
#33
LuJiansen
closed
1 year ago
3
Triangle fails to plot some off-diagonal contacts
#32
auberginekenobi
opened
2 years ago
3
Neoloopfinder doesn't find loops and assemblies that I think it should
#31
auberginekenobi
opened
2 years ago
1
assemble-complexSVs "Called 0 connected assemblies"
#30
DittmanC
opened
2 years ago
1
Run segment-cnv with KeyError: 0
#29
jxulab
closed
2 years ago
6
compatibility with hiChIP data
#28
SplitInf
opened
2 years ago
2
calculate-cnv runtime error
#27
katreya42
opened
2 years ago
4
CNV adjustment
#26
DittmanC
opened
2 years ago
2
UnboundLocalError: local variable 'pool' referenced before assignment
#25
DittmanC
closed
2 years ago
2
Custom enzyme list
#24
mt96stanley
closed
2 years ago
3
How do I handle cool files
#23
shidetong
opened
2 years ago
1
How to output the Regular loop and Tads without SVs
#22
wzhang42
opened
2 years ago
4
result in error running assemble-complexSVs
#21
zhangli271828
opened
2 years ago
0
Generating the genome wide loops
#20
wt2855918
opened
2 years ago
0
input with mouse cells
#19
skytguuu
closed
2 years ago
4
Some questions for positive and negative training dataset
#18
wzhang42
opened
2 years ago
1
The discrepancies of neoloop results and neotad results
#17
wzhang42
closed
2 years ago
2
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