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XiaoTaoWang
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NeoLoopFinder
A computation framework for genome-wide detection of enhancer-hijacking events from chromatin interaction data in re-arranged genomes
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Could you give me some guidelines to manually review and validate the neoloops and neotads
#16
wzhang42
opened
2 years ago
1
problem in converting hic to cool inorder to run neoloop
#15
zhangli271828
closed
2 years ago
8
neo-loops/neotad result with the last column as 0 and 1
#14
wzhang42
closed
2 years ago
6
missing file K562-test-SVs.txt in tutorial
#13
zhangli271828
opened
2 years ago
3
What is the strength of the neoloops?
#12
joreynajr
closed
2 years ago
2
Bugfix for `AttributeError: module 'cooler.ice' has no attribute 'Cooler'`
#11
jrhawley
closed
2 years ago
1
A# and C# in Assemblies.txt
#10
wzhang42
closed
2 years ago
3
Data resource files not downloading correctly
#9
jrhawley
closed
1 year ago
1
Fail on correct-cnv
#8
wzhang42
closed
2 years ago
2
cnv-calculate Runtime Error
#7
wzhang42
closed
2 years ago
2
Fail on correct-cnv: issue with cooler.balance
#6
kokonech
closed
2 years ago
10
Could you recommend some tools/platform to directly generate the SV breakpoints from Hi-C data, and can be used by NeoLoopFinder?
#5
wzhang42
opened
2 years ago
4
What's the best way to generate the simple SV file?
#4
csijcs
closed
2 years ago
7
CNV segmentation crash
#3
cmdoret
opened
3 years ago
11
AttributeError: module 'rpy2.robjects.numpy2ri' has no attribute 'numpy2ri'
#2
YuanlongLiu
opened
3 years ago
4
calculate-cnv: Invalid interval bounds!
#1
sidiropoulos
closed
3 years ago
3
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