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### Description of feature
While not necessarily required, these can fit some recommended protocols by vendors like KAPA, (cf. "KAPA Bioinformatics Analysis for Longitudinal Detection of Circulating …
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I'm hoping to use bio-seq for bit-packed (de)serialisation of sequences. AFAICT this is not supported because there are no methods for converting between `Seq` and `Vec` or similar. Even `impl TryFrom…
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Hi! I'm writing with a question about input matrix size limits. I have a large alignment file-- 158 individuals, 49M sites, and I'm getting a segmentation fault error. Do you have any recommendations …
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Thanks for writing `taxor` and including useful databases!
What the community (or maybe just me) really wants is a database that covers more of the microbial kingdom, but with the benefit of GTDB f…
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I would like to extract genomic sequences for some exonic regions corresponding to the assembled transcripts. To build my assembly, I use StringTie which gives me coordinates for transcripts and exons…
hagto updated
6 years ago
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It was originally implemented this way, but also erroneously caused the DNA sequence of the extension to display backwards. See #959.
I made the call to quick-fix the DNA sequence issue, since it c…
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- data type
- file io
- support centroid
bobye updated
9 years ago
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From Lewis:
> There are a couple of approaches to DNA searching we could take with SEQR. One is to do a translating blastx type search that takes a DNA sequence, converts it to 6 possible protein se…
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When a fastq has a missing 1st entry (due to short reads and trimming) seqkit seq infers that the type of sequences in the file is "unlimit" rather than "dna": https://bioinf.shenwei.me/seqkit/usage/#…
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# Hung up process
I am currently working on completing the GTDB and GenBank updates. This requires ~200,000 and ~1,000,000 sequences to be gathered and sketched. Typically, there has been no issue …