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iqtree
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iqtree2
NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
GNU General Public License v2.0
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Memory issue?
#321
brmagalis
closed
6 days ago
2
ERROR: phylotreepars.cpp:63: void PhyloTree::computePartialParsimonyFast(PhyloNeighbor*, PhyloNode*): Assertion `!aln->ordered_pattern.empty()' failed.
#320
buiguesj
opened
1 week ago
1
Model selection time is ~20x slower on the Windows binary vs the Linux binary
#318
Thernn88
opened
2 weeks ago
0
Concordance Analysis Bug - Large Number of Partitions?
#316
jasongallant
opened
2 weeks ago
6
ERROR: File not found AA
#314
wenhaoli-wenhaoli
opened
3 weeks ago
4
IQ-TREE multicore version 2.3.6 for Linux x86 64-bit issue with core usage when using -T AUTO and --threads-max combination
#312
uee9
opened
1 month ago
1
`-MFP` fails with parition option `-q`
#311
roblanf
opened
1 month ago
1
Feature Request: Add option to output nhx instead of iqtree specific newick
#310
ammaraziz
opened
1 month ago
0
EX2 model inconsistent lnl btwn .sitelh and .log files when -blfix specified
#309
evolbeginner
opened
1 month ago
0
Inconsistent results from AU-test
#308
marybarker
opened
1 month ago
2
IQ-TREE CRASHES WITH SIGNAL SEGMENTATION FAULT
#307
z626093820
closed
1 week ago
1
IQ-TREE CRASHES WITH SIGNAL ABORTED: 'std::ios_base::failure'
#304
ClarabellaFantilli
closed
1 month ago
7
Segmentation fault with large input matrix
#303
AryehMiller
opened
1 month ago
1
Error message could be more helpful when file not found
#302
corneliusroemer
opened
1 month ago
0
Why does cmaple cause two versions of iqtree to be available: iqtree and iqtree-aa?
#299
corneliusroemer
opened
1 month ago
0
CI fails for windows
#298
corneliusroemer
closed
1 week ago
0
chore(ci): make windows ci work by using c++14 for windows ci
#297
corneliusroemer
closed
1 week ago
0
Onnxupdate
#296
Hashara
closed
1 month ago
0
Replace TravisCI badge with GitHub Actions badge
#292
ryneches
closed
1 month ago
0
ERROR: ratefree.cpp:199: virtual void RateFree::initFromCatMinusOne(Checkpoint&, double): Assertion `fabs(sum_prop + getPInvar() - 1.0) < 0.01' failed.
#291
yeeus
opened
1 month ago
2
Onnxupdate
#289
Hashara
closed
2 months ago
0
Onnxupdate
#288
Hashara
closed
2 months ago
0
Web docs (and wiki) are different from cli help
#287
ammaraziz
opened
2 months ago
0
Manual out of date with respect to `-t RANDOM`
#286
davidcerny
opened
2 months ago
0
[Feature Request] Add support for the `--link-exchange-rates` option in the MAST model
#285
StefanFlaumberg
opened
2 months ago
2
Version 2.3.6
#284
thomaskf
closed
2 months ago
0
Despite passing `--output-multifurcating-tree`, resulting tree is bifurcating, when run in cmaple mode
#283
corneliusroemer
opened
2 months ago
1
Cmaple CLI args not appearing in help string
#282
corneliusroemer
opened
2 months ago
0
`--polytomy` flag seems to be ignored when iqtree is using cmaple
#281
corneliusroemer
opened
2 months ago
1
doc: Add supported platforms shield to readme
#280
corneliusroemer
closed
2 months ago
0
Paired bootstrap values in a .treefile without having specified -alrt
#279
davidfbibby
opened
2 months ago
0
How to reduce verbosity of build logs?
#278
corneliusroemer
closed
2 months ago
1
Consider lowering minimum clang version to 16 for bioconda compatibility
#277
corneliusroemer
closed
2 months ago
1
doc: code not well formatted for macosx compilation guide
#276
corneliusroemer
opened
2 months ago
0
Build issues on macOS 14.5: ` error: call to 'gettimeofday' is ambiguous`
#275
corneliusroemer
closed
1 week ago
1
Suggestion: Error instead of warn if `--pathogen-force` is set but cmaple not integrated
#274
corneliusroemer
opened
2 months ago
0
Document in help string that `--nt`/`-c`/`-T`/`--threads` are synonyms, print always `-T` instead of `-nt`
#273
corneliusroemer
opened
2 months ago
1
Bug in writing best_model.nex file
#272
roblanf
closed
2 months ago
1
Crash due to assertion failure in `PhyloSuperTreePlen::computeFuncDerv`
#270
davidcerny
opened
2 months ago
3
Fix issue #255
#269
flashhhhh
closed
2 months ago
0
Support Exporting Analysis to MrBayes
#267
IntegerLimit
opened
2 months ago
3
Support Exporting Codon Analysis to MrBayes Block Files
#266
IntegerLimit
closed
2 months ago
0
Support Exporting Protein, Binary and Morphological Data to MrBayes
#264
IntegerLimit
closed
2 months ago
0
not an issue, would like clarification on how to use pmsf
#262
vmkhot
closed
2 months ago
0
Error when estimating linked exchangeabilities (GTRpmix)
#261
mjamy
closed
2 months ago
4
Support Exporting DNA/RNA Analysis to MrBayes Block Files
#260
IntegerLimit
closed
2 months ago
0
User warning when induced root not found in gCF
#259
ryneches
closed
2 months ago
0
[BUG] Infinite loop while using BNNI under PMSF model
#255
StefanFlaumberg
closed
2 months ago
2
problem with start the program in command
#252
zeynab1995
closed
2 months ago
12
Add option to force-unroot input trees
#251
roblanf
opened
3 months ago
4
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