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It would be nice to support functionality similar to what OntoRat provides.
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- [ ] create yaml file for each DP, see for example [uberon patterns](https://github.com/obophenotype/uberon/tree/master/patterns)
- [ ] set up pipeline to use dosdp-tools to generate TSVs
- [ ] con…
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The pipeline has grown overly complex. It could be simplified to run mostly through a unified DOSDP template allowing a range of variables to feed into automated definitions/label/synonyms etc.
The …
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I installed per the instructions and added the executable to my path. If I am in `target/universal/stage/bin/` and type `dosdp-tools -h` I get a reasonable help message, but if I am anywhere else, I g…
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For this or the next VFB ontology call, it would be good to do the following:
1. Review all the tsv files in the [original pipeline](https://github.com/FlyBase/drosophila-phenotype-ontology/tree/mast…
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For all terms in https://docs.google.com/spreadsheets/d/13NJsDH0fBZEFYuGZYkJ2QUah9WV9731zliiW-9uOTuA/edit#gid=2059655613
xrefs → CL for all reviewed definitions
Bioregistry needs a cell Guide ent…
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DOSDP json schema docs need a simple, persistent URL that implementers can use for validation and that can be used in JSON-schema import statements once core and OBO are split.
@cmungall Any sugges…
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Updated action items:
Before taking further action on this, we should get in touch with Sharon Plon and her team to inform her of these potential changes. Note to self - see email: Re: NCI Thesauru…
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See https://github.com/INCATools/dead_simple_owl_design_patterns/pull/46
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It would be useful to have a way to specify default values for vars, with DOSDP_tools allowing TSVs that lack columns for vars with default values (A bit like kwargs in Python) and also allowing for t…