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I am wanting to extract the longest transcript for each gene from a gtf file (or gff3 file). I have installed cgat gtf2gtf and have tried using various parameters to do this using Drosophila melanog…
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The list of model organisms that researchers are using for studies of development is the following:
- Human - Homo sapiens
- Mouse - Mus Musculus
- Zebrafish - Danio rerio
- Chick embryo - Gallu…
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We would like to add Drosophila melanogaster data to work with Julie Aspden and lab, starting with data from [Extensive translation of small Open Reading Frames](http://dx.doi.org/10.7554/eLife.03528.…
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**Original article:**
Brembs B and Heisenberg M (2000): The Operant and the Classical in Conditioned Orientation of Drosophila melanogaster at the Flight Simulator. Learn Mem. 7(2): 104–115. doi: 10.…
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### Describe the bug
Not sure from the log file what caused this or how to run it again manually. Log file attached, so hopefully that give you enough info to figure out what's going on.
### Is this…
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@Silvie menthioned that something went wrong with this experiment - it doesn't have inferred cell type information, so anatomogram shouldn't be displayed on the experiment page but it is there (empty)…
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https://www.ebi.ac.uk/ena/browser/home
https://www.ebi.ac.uk/ena/browser/downloading-data
https://www.ebi.ac.uk/ena/browser/about/content
https://ena-docs.readthedocs.io/en/latest/retrieval/file-do…
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In version .80:
For rice(Oryza sativa Japonica Group), both ensembl gene ids and ensembl transcript ids from example form won't be recognized by ShinyGO. While other type of the gene ids in the form …
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brainstorm/list all kind of information one might gather, and class it
I already see 3 kind of information:
- info about the reagent (RRID, name, source,date of birth...)
- info about the invento…
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Is `fastp` able to identify and trim Nextera mate-pair adapters that occur in the middle of a read?
I currently use https://github.com/sequencing/NxTrim