-
## nf-core
nf-core produces pipelines with gold standard tools for various analyses.
- Workflow manager using `nextflow` language.
- Compatible with SLURM
- Uses Docker, Singularity and conda t…
-
I find that bib2df does not correctly parse when field names are "title", "author" etc. Has anyone else faced this problem?
-
Hello,
I'm trying to get the code for [methylSig](https://github.com/sartorlab/methylSig) in working order with the Bioc 3.8 and devel versions of `bsseq` and I'm running into a problem I didn't ha…
-
* [x] no hg38/h19 pop out 5827464 , in fact, it will get from 10x pipeline.
* [x] ~~no edit/configure function pop out~~: only for 10x
* [ ] status not keep when refresh page after click submissio…
-
See [De Domenico et al. (2015)](https://doi.org/10.1103/PhysRevX.5.011027).
-
## Description
As a bioinformatician, I would like to run the complete workflow, including generating QC plots, pairwise clustering, regional methylation, and DMR analysis on the Smallwood 2014 dat…
-
**A reproducible template workflow for single-cell DNA methylation data**
DNA methylation is a heritable epigenetic mark that shows a strong correlation with transcriptional activity, and may be de…
-
This is implicitly not possible in `v1.0`: http://www.commonwl.org/v1.0/Workflow.html#WorkflowStepInput
The definition for `valueFrom` ends with "The value of inputs in the parameter reference or e…
-
Hello,
I am recently using your pipeline with two replicates but keeping having the hangup issue during the alignment stage, do you have any suggestions?
======================================
20…
-
Hi folks, this issue is to brainstorm what kind of datasets can be useful to deepbio projects. Some good starting points will be datasets on genomics, proteins but this broad. More specific datasets a…