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Hello,
I am recently using your pipeline with two replicates but keeping having the hangup issue during the alignment stage, do you have any suggestions?
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20…
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Hi folks, this issue is to brainstorm what kind of datasets can be useful to deepbio projects. Some good starting points will be datasets on genomics, proteins but this broad. More specific datasets a…
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This is implicitly not possible in `v1.0`: http://www.commonwl.org/v1.0/Workflow.html#WorkflowStepInput
The definition for `valueFrom` ends with "The value of inputs in the parameter reference or e…
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Instructions for developing in local computer
1. [x] clone this repo to your local environment
2. [x] create a branch on your local
3. [x] setup the dependency packages [django=2.2.8,python3]
4.…
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Hi there, thanks for the great tool!
I'm incorporating `Rbowtie2::bowtie2_samtools` into my epigenomics pipeline, and I noticed the messages while running it:
```
arguments 'show.output.on.con…
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@vguerracanedo mentioned during the meeting on 2016-05-16 that we should perhaps look into getting a speaker from the field and/or industry. The following is taken from an email she sent with more inf…
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| Name | Department/Program | Experties/Interests |GitHub ID |
| ------------- | ------------- | ------------- | ------------- |
| Annie Cavalla | Bioinformatics | Cancer genomics, single cell tra…
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Hello! I love this package, so thank you so much for a python-native solution to scATAC analysis. It's been indispensable.
I had a question about runtime for the atlas-level dataset. I was reading …
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A single run of eva.o takes around 15-20 mins. To run it 100 times (as suggested in the manual) would obviously take a pretty long time. I was wondering if there are any parallelization or speedup opt…
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**A reproducible template workflow for single-cell DNA methylation data**
DNA methylation is a heritable epigenetic mark that shows a strong correlation with transcriptional activity, and may be de…