Epigenomics-Screw Screw issues

Epigenomics-Screw / Screw

SCREW: A Reproducible Workflow for Single-Cell Epigenomics

MIT License

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issues

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SCREW.cwl not found

#44 FarahZKhan closed 6 years ago
2
cwl and personal R libraries

#43 sibylgisela opened 6 years ago
0
Update Dockerfile

#42 oneillkza closed 6 years ago
0
Fixes pairwise-distance.sh for read-only $indir

#41 jjonphl closed 6 years ago
0
Added converter for additional data sets

#40 jjonphl closed 6 years ago
0
Reorganise code

#39 oneillkza closed 6 years ago
0
Visualise DNA methylation per library for a specified region

#38 oneillkza opened 6 years ago
1
Use ChipSeekR to visualise DMRs

#37 oneillkza opened 6 years ago
1
Make heatmap from regional methylation output

#36 oneillkza opened 6 years ago
0
Error running pairwise-distance.sh from inside docker (pairwise-distance.cwl)

#35 jjonphl closed 6 years ago
3
Create a complete workflow for the analysis of the Smallwood 2014 data

#34 oneillkza opened 6 years ago
4
Write converter code for additional data sets

#33 oneillkza closed 6 years ago
0
Create a complete workflow for analysis of the Guo 2013 data

#32 oneillkza opened 6 years ago
1
Create a complete workflow for analysis of the Farlik 2015 data

#31 oneillkza opened 6 years ago
1
Create a complete workflow for the Farlik 2016 data set

#30 oneillkza opened 6 years ago
1
Calculate average DNA methylation across regions of interest

#29 oneillkza opened 6 years ago
0
Calculate average DNA methylation across known TFBS footprints

#28 oneillkza closed 6 years ago
1
Hackseq 2017 hackathon logistics

#27 oneillkza opened 6 years ago
0
Connect preProcess.cwl to pairwise-distance.cwl

#26 oneillkza opened 6 years ago
4
Pool meth

#25 oneillkza closed 6 years ago
1
Adding files for subsetting and clustering workflow

#24 cjfang closed 6 years ago
0
heatmap, pooling, updates to preprocess

#23 cjfang closed 6 years ago
0
Addition of creating bulk DNA methylation profiles

#22 cjfang closed 7 years ago
0
Updating workflow preprocess to include generation of methylation bigWigs

#21 cjfang closed 7 years ago
0
Added generation of methylation bigWIGS to preprocess workflow

#20 cjfang closed 7 years ago
0
clarify CWL nomenclature & add a link

#19 mr-c closed 7 years ago
1
Travis testing

#18 oneillkza closed 7 years ago
0
Pulling this back into travis test branch since I committed to master by mistake

#17 oneillkza closed 7 years ago
0
Create a real world workflow instance for screw

#16 oneillkza closed 6 years ago
1
Docker and Quay improvements

#15 neksa closed 7 years ago
1
Set up Quay.io image to rebuild on changes to Github Dockerfile

#14 oneillkza closed 7 years ago
4
Update docker file with dependencies for bigwig generation

#13 oneillkza closed 7 years ago
0
Call DMRs from pooled libraries using DSS

#12 oneillkza opened 7 years ago
0
Restructuring our source code

#11 bdecato closed 6 years ago
3
Real-world Single Cell Methylation Data Download

#10 bdecato closed 7 years ago
4
Set up Travis Continuous Integration and Unit Tests

#9 bdecato closed 7 years ago
5
Run DeepCpG

#8 bdecato opened 7 years ago
0
Run LOLA across a set of regions of interest

#7 bdecato opened 7 years ago
0
Generate Methylation BigWIGs

#6 bdecato closed 6 years ago
1
Generate a QC summary report for a whole data set

#5 bdecato opened 7 years ago
0
Pool the DNA Methylation Data from Individual Cells to Create a Bulk-like Profile

#4 bdecato opened 7 years ago
0
Generate GREAT Report for a Set of Regions of Interest

#3 bdecato opened 7 years ago
0
Generate a Report from Copy Number Information

#2 bdecato opened 7 years ago
0
Call Copy Number From Single-Cell DNA Methylation Data

#1 bdecato opened 7 years ago
0