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NGB is the best genome visulization ,i've ever used,thanks a lot ,
can we show exon number in gene track?
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First off, thank you for this amazing tool!
We are high school students from the Broad Summer Scholars Program using rMATS. We are excited to learn from your RMATS software whether changes in exon…
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Hi Eric
I am doing the rmats sashimi plot but was unable to get the splice junctions. If i am using A3SS.txt file so how to chose the coordinates. Can you please help..
![image](https://github…
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can Whippet detect exon skip events?
it seems that CE (core exon) doesn't contain exon skip.
Thank you!
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Hello Trent,
Thanks again for creating exon! I was trying out the R package and encountered an error when installing from source. I am using a Macbook Pro with M2 processor running clang version 14…
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In the Limitations section you write.
- Minimap2 often misses small exons.
Can you define "small exons"? what's the range? there are exons of 3 bps just to be clear.
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Hi there,
Thanks for the wonderful new tools! I have a question about the output of the script [new_annotator_with_skipping.py](https://github.com/landau-lab/ONT-sc-splice/blob/main/junction_annota…
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Do we plan to spawn japonicus files equivalent to the pombe CDS coordinates and exon coordinates? If so, can they be put in directories that mirror the pombase placement, i.e.
www.japonicusdb.org/d…
mah11 updated
2 years ago
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I noticed that VEP 112 predicts an opposite consequence as compared to previous versions for certain insertions (rare cases). It predicts `inframe_insertion,stop_retained_variant` in cases where `fram…
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Hi there,
Is there an example for and ? I failed to run sorf_to_genome.py, and kept giving IndexError at exon linesplit.
Thanks!