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I just tried to assembly the tetraploid with MaSuRca 3.2.7, but the file "PLOIDY.txt" shows "1", how can I fix that?
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### Project short name:
MetastaticLUADReprogramming
### Primary Wrangler:
Ida
### Secondary Wrangler:
### Associated files
* Google Drive: [folder](https://drive.google.com/drive/folders/19DQaa_vy…
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Possible data:
- [Bystander CD8+ T cells are abundant and phenotypically distinct in human tumour infiltrates](https://www.ncbi.nlm.nih.gov/pubmed/29769722): https://flowrepository.org/id/FR-FCM-ZY…
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Hello!
In the paper, it is mentioned that "The current best assembly spans 15.34 Gbp, while the GenomeScope estimate is 14.1 Gbp (see Supplementary Figs. 21 and 22)". Fig. S21, GenomeScope estimate…
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### Project short name: Jiang_X
### Primary Wrangler: @anu-shiva
### Secondary Wrangler:
### Associated files
* [Google Drive](https://drive.google.com/drive/folders/10fYwxP5ls45BecvFvpUCCGTOF…
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Hi there trying to install cytofkit in R and says not available in R version 3.5 can you help? Please see code below:
>source("https://bioconductor.org/biocLite.R")
Bioconductor version 3.8 (BiocI…
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Hi,
I have some questions about pruning step (how heterozygous alleles be partitioned...) and input/output files.
1. What is the difference between collapsed regions and chimeric contigs in prunin…
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In the "inside_polygon" function of "cytopy/data/geometry.py", the performance of multi process implementation is very poor. A 10000 line of data takes nearly 30 seconds, but it only takes less than 0…
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Dear developers,
When running the ```snakemake --use-conda test_immunedeconvz``` command I get the following error:
```
Rscript -e "library(methods); library(devtools); document()"
Updating i…
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Hello,
I have HiFi data for a diploid insect, with an estimated genome size of ~425 Mb according to flow cytometry data. I used Kraken to filter reads and make sure there were no adapters in the re…