schatzlab genomescope issues

schatzlab / genomescope

Fast genome analysis from unassembled short reads

Apache License 2.0

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issues

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I am a user of the genomescope software and have encountered some problems and seek your help. I hope to get your reply.

#143 wjw-yj opened 1 day ago
1
haploid vs diploid graph models for unidentified ploidy

#142 gunjanpandey opened 2 days ago
0
tetraploid genome result interpretation

#141 Liyong-Zhang opened 3 days ago
0
Triploid genome

#140 gunjanpandey closed 1 week ago
2
How to fit model better?

#139 gunjanpandey closed 3 weeks ago
2
Can we manually adjust the coverage judged as error?

#138 wu116 closed 2 weeks ago
4
Help understand the output

#137 gunjanpandey closed 3 weeks ago
4
Strange results, request interpretation

#136 YPGG1234 closed 1 month ago
11
Please help me to understand output

#135 OrsonMM opened 1 month ago
1
Is command line for ploidy different?

#134 gunjanpandey closed 1 month ago
4
Should a larger K value be chosen?

#133 GLking123 opened 3 months ago
1
Estimated genome size is half

#132 gunjanpandey opened 3 months ago
2
Heterozygous peak identified as errors?

#131 Haoran-Xue opened 4 months ago
3
Ploidy determination

#130 Samyuktha9624 closed 4 weeks ago
2
Follow up RE: Confounding GenomeScope Output

#129 foreignsand opened 5 months ago
5
dup (in figure) and bias (in model.txt)

#128 shin0727 opened 5 months ago
2
Model and observations don't converge

#127 malvaradol closed 5 months ago
3
GenomeScope Output from PacBio Hifi ccs Reads is Confounding

#126 foreignsand opened 5 months ago
3
Heterozygous tetraploid genome model fit

#125 RNieuwenhuis closed 5 months ago
2
expectations for pooled samples

#124 rsbrennan closed 6 months ago
2
Heterozygosity rate < 0

#123 cfz1998 closed 6 months ago
3
mergeing HiFi data of two samples didn't increase hetorozygosity

#122 leon945945 opened 6 months ago
0
503 Service Unavailable

#121 cgubili opened 6 months ago
2
Unable to converge

#120 simleopold opened 7 months ago
3
No file upload message

#119 marcodimarsico opened 8 months ago
1
High heterozygous?

#118 shehongbing opened 8 months ago
3
Strange genomescope result

#117 majssssa opened 9 months ago
1
Low model fit while ran Genomescope 2.0

#116 yui2134000 closed 9 months ago
0
No file uploaded error message

#115 jferbe1 closed 9 months ago
3
FAQ not up to date regarding ploidy

#114 Hannah-Doerpholz opened 10 months ago
1
potentially poor fitting model for proposed tetraploid

#113 sjfleck opened 11 months ago
1
smaller genome size and lower heterozygosity

#112 Xinxin0314 opened 11 months ago
0
How to produce vector graph (i.e. pdf), not bitmap image i.e. .png)?

#111 sanvva closed 8 months ago
4
error while using genomeScope

#110 RezwanCAAS opened 1 year ago
4
Higher heterozygosity

#109 shehongbing opened 1 year ago
1
Two strains with different ploidy?

#108 ricen90 closed 4 months ago
3
alloploid genome size estimate

#107 s-kyungyong opened 1 year ago
4
No file upload message

#106 ndre0001 opened 1 year ago
5
No file uploaded

#105 lyy005 opened 1 year ago
4
Estimate good max k-mer coverage

#104 wqshi opened 1 year ago
3
small bump explanation and -l parameter

#103 amv33576 opened 1 year ago
10
Parameter: Average k-mer coverage for polyploid genome

#102 manoharbisht1998 opened 1 year ago
2
can't show the result

#101 JierongWang opened 1 year ago
3
Genome size underestimated comparing assembled data

#100 paul-bio opened 1 year ago
7
strange result of HiFi data

#99 xiaowan1997 opened 1 year ago
6
only 1 peak in a heterozygous diploid

#98 sallycylau closed 1 year ago
4
No graph generated

#97 rosspdu closed 1 year ago
2
No clear peak

#96 HVHunt opened 1 year ago
3
Tetraploid genome size

#95 Seajull opened 1 year ago
2
Unable to understand the plots for genomesize estimation

#94 vinitamehlawat opened 1 year ago
4