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I utilized tINIT and Hart2015_ RNAseq.txt generates a model and then runs it again in the same way. Why don't the two runs yield the same model?
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Hi, Dr. Josh.
Recently, i am focus on calling SNPs in a polyploid species.After manually check the original code, i found there may be a bug in the "Haplotype.py" script. The possible mistake …
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This is a far reaching change that I would be rather conservative about. I'm happy to probe the community but maybe the ability to change the global configuration to include infinity is enough?
@op…
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**Project:**
Transcription factor binding sites are important regulatory elements found upstream or downstream of a gene's transcription start site. These DNA-binding sites are non-exact, often repres…
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such as https://www.wikipathways.org/index.php/Pathway:WP1438
How can we annotate the species?
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Hi,
I am trying to install CADD-scripts on my local env and the legacy dependency of mmsplice 1.0.1 with concise is giving me problems installing. Since mmsplice 2.x the concise dependency has be …
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Hello,
I built a singularity image utilizing the dependencies you specified for Cheui, and then attempted to run cheui-solo via the following:
`singularity exec Cheui/cheui_image.sif python /WT/…
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https://github.com/ga4gh/vmc/issues/11#issue-237162358
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Hi, StrainDesign has worked very well for me when used on basic stoichiometric genome-scale models (e.g. iML1515). However, I am encountering problems when I try to use it on an enzyme-constrained mod…
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Hello everyone,
I am new to Escher converter and I was wondering if :
First, convert directly ,using a python code, a SBML file (containing a model at a genome scale) into a Json file in order to ex…