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For models that we use to exemplify PINTS' ABC capabilities - in particular, stochastic reaction equations - there are sometimes exact (computationally expensive) and approximate (computationally chea…
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I recently came across the package `Catalyst.jl` (and I am very impressed with/ excited about it!).
I need many samples (in the order of 10^5) from the Gillespie simulation of a chemical reaction …
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Implementing the Gillespie Algorithm in the agents.jl framework is more complex than I thought.
I realised this by coding a new example, the Spatial Rock-Paper-Scissors game. See pull request JuliaDy…
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Hi, I encounter the same problem as in https://github.com/facebookresearch/LAMA/issues/10.
And I found the reason why 2 examples are filtered is that the `obj_label` are `1970s` and `1990s`. And in `…
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Hello,
Implementing the Gillespie Algorithm in the agents.jl framework is more complex than I thought.
I realized this by coding a new example for `AgentsExampleZoo.jl`, the Spatial Rock-Paper-Sc…
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As a modeller, I want to know how I should implement rules for my simulation model.
As a developer, I need to have a way for the user to inform the simulation of how events should be scheduled and upd…
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We add two methods to posets.py:
- "spectrum" - This method has input a poset `P` and an element `a` of `P`. It outputs the `a`-spectrum of `P`, which is a list of integers whose i-th entry contai…
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**[Chris Gillespie](https://jira.spring.io/secure/ViewProfile.jspa?name=chris_samcat)** opened **[INT-3919](https://jira.spring.io/browse/INT-3919?redirect=false)** and commented
`org.springframework…
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Check in on progress with learning StochPy the Gillespie Algorithm and libraries to help with JIT compilation and parallelization
and/or reading affiliated articles.
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- [x] Eliminate `@reaction_func` and how Hill functions work. (Niklas)
- [x] Fix ReactionNetworkImporters. (Sam)
- [x] Fix BCR loading and update BCR benchmarks. (Sam)
- [x] Work towards previous B…