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I am contacting you since I am encountering an issue with the Package : Hierfstat ; and the Fonction : allelic.richness
My guess is that my input file contains too many entries, as if cut down to ~20…
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**Hierfstat** works for pairwise Fst, but requires another data transformation, and does not calculate confidence or P-value
```r
library(adegenet)
library(hierfstat)
myData
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Is there any particular reason why these functions handle a `genind` input:
https://github.com/jgx65/hierfstat/blob/5d173d2cff8f91b14717f2356fd776db4f5edbc0/R/ppboot.R#L17-L19
https://github.com/j…
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Hi,
I am trying ton convert a vcf in .arp, and I got this error message.
**_Generating arlequin file
Error: Can't subset columns that don't exist.
x Column `POP_ID` doesn't exist_**
****H…
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Hello Thierry,
I am running into a similar error as the one discussed in issue #103
One of the final steps, genomic converter, grings this error:
Transferring data to genomic converter...
C…
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The logic behind the bootstrapping is weird, check and fix it
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Hi,
I have just realized that these two functions do not give the same result when they both should be providing (according to the descriptions) pairwise estimated of Fst following Weir and Cocker…
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Hello,
is there a function to plot a heatmap with the matrix obtained using boot.ppfst?
thanks.
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Hi there! I'm loving `hierfstat` and am using it quite often. While most of the functions work quite quickly, computing time for `genet.dist()` increases non-linearly with number of populations and SN…
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Hi @jgx65,
I've been using `hierfstat` to calculate `basic.stats` and genetic distances, including WC Fst from VCFs for a while now. I'm using RADseq datasets. Given that the datasets often have a …