jgx65 hierfstat issues - Githubissues

jgx65 / hierfstat

the hierfstat package

24 stars 14 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

Negative kinship values with beta.dosage?

#73 alexkrohn closed 1 month ago
3
no issue. Structure output is correct, two rows/individual.

#72 iLAMtools closed 1 month ago
1
boot.ppfst

#71 Erikacj closed 3 months ago
6
plotting the kinship matrix and printing it

#70 alasousi85 closed 4 months ago
3
NaN as result of basic.stats calculations for small populations

#69 JoulesOLVERA closed 4 months ago
2
Treatment of populations of 1

#68 sbreitbart opened 7 months ago
10
non-numeric argument error in boot.ppfis

#67 jaflury opened 9 months ago
5
pairwise.WCfst Error - non-conformable arrays

#66 silknets closed 1 year ago
3
Basic Stats (and Ho/Hs/Fis) Require Population Name to be Numeric With A Single Population

#65 alexkrohn closed 1 year ago
4
How to Interpret Negative Fsts

#64 alexkrohn closed 1 year ago
2
NeiFST_calcuation_error

#63 laxmangene7 closed 1 year ago
2
Fis calculations in basic.stats and boot.ppfis differ

#62 pygmyperch closed 1 year ago
4
boot.ppfst throwing an error with "diploid=F"

#61 lchall08 closed 1 year ago
4
`basic.stats` Ho calculation is actually allele frequency

#60 eilishmcmaster closed 1 year ago
4
problem performing sex.biased.test() function

#59 danielsangarci closed 2 years ago
3
allelic.richness rounded numbers

#58 Gillous closed 2 years ago
3
pairwise.WCfst(genind2hierfstat(x)) and genet.dist(x, method = "WC84") do not yield the same result

#57 DaniEstevezBarcia closed 2 years ago
8
Conversion genind to hierfstat df a little inconsistent

#56 courtiol closed 2 years ago
2
plot boot.ppfst

#55 andreiaamaral closed 2 years ago
4
Calculating FST with Dosage and Missing Data

#54 alexkrohn closed 2 years ago
5
Parallelizing genet.dist() ?

#53 alexkrohn closed 2 years ago
2
gstat.randtest missing

#52 osowiecki opened 2 years ago
4
write.ped() removes first locus from hierfstat object

#51 DaniEstevezBarcia closed 2 years ago
5
Genet.dist not keeping population names

#50 jennagrimshaw closed 2 years ago
3
estimated Fis value outside of bootstrapped CIs

#49 casparbein closed 3 years ago
7
Inconsistency in genet.dist function

#48 akamolphat closed 3 years ago
3
problem of pop.freq in pairwise.WCfst

#47 themrca closed 3 years ago
2
write.struct documentation

#46 plantarum closed 3 years ago
2
Cannot install package...

#45 dylanHco closed 3 years ago
2
explanation of behavior

#44 pdimens closed 3 years ago
3
boot.ppfst

#43 jwwhale closed 3 years ago
6
getal seems to require ordered population labels

#42 falseflattortuga closed 3 years ago
3
Cannot calculate global Fst with confidence intervals

#41 TharinduTS closed 3 years ago
6
Impossible to find "fstat" function

#40 Vsonn closed 3 years ago
2
2 funny problems when i use HierFstat

#39 zxy1555847 closed 3 years ago
1
I can‘t find the example file（ “examplehier.txt”）

#38 zxy1555847 closed 3 years ago
1
confidence intervals for average betas (pairwise FST)

#37 afontcub closed 3 years ago
2
betas.Rd

#36 yasfoster closed 4 years ago
8
Problems estimating observed heterozygosity

#35 EJFuchs closed 4 years ago
1
fix bug in getal.b

#34 timflutre opened 4 years ago
0
`getal.b` should determine `modulo` per column and not once for the whole dataset

#33 timflutre opened 4 years ago
1
pairwise.WCfst Error in 1:sum(data[, 1] == i) : NA/NaN argument

#32 piotyama closed 4 years ago
2
hierfstat::boot.ppfis function ‘+’ not meaningful for factors

#31 dani-davenport closed 4 years ago
2
Error because typo in fstat.from.adegenet.R header

#30 VitorAguiar closed 4 years ago
1
Request to update hierfstat to CRAN

#29 zkamvar closed 3 years ago
7
tests lead to g.star=0 on all permutations

#28 nehasavant closed 5 years ago
8
boot.ppfst requires pop to be numeric

#27 greavess closed 5 years ago
5
pairwise.neifst doesn't work if I use diploid=FALSE

#26 akang1414 closed 5 years ago
8
allelic.richness does not work for single-locus datasets

#25 nikostourvas closed 5 years ago
1
Bug in `getal`

#24 alephreish closed 3 years ago
2