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Hello,
I want to extract the 1/k0 values for my precursors from my DIA-PASEF run. In the DIA-NN output there are two ion mobility entries: IM and iIM that are slightly different. What is the exact …
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Is there a roadmap to incorporate IM into the feature detection algorithms? If not then in the interim is it possible to include drift time or ion mobility information into the featureMap, say using …
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sgibb updated
7 years ago
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- IM needs to be annotated precursor from ID (check if sage outputs it and annotate in idXML!)
**update: annotated in "ion_mobility" column of pin or result file**
Done: check here if column exists:…
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Would be nice if you @chufz and @michaelwitting could have a look at the backend to see whether the data provided by the backend makes sense. Best to start with the vignette.
From the `opentimsr` …
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Hi, I am still learning the code and physics of Hall Thruster (I wrote an issue with the tutorial not long ago) and I have new questions !
1. I did try to study the sensitivity of simulation to the…
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Sometimes it makes sense to specify tolerances at the level of single analytes, e.g., if the tool is used for requantification and we have some estimate on the local mass or ion mobility error.
This…
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Dear Vdemichev,
I am using Waters Synapt G2 to do IMS proteomics experiment.
I have converted the raw files using proteowizard and I combined the ion mobility scans.
I started by generating the s…
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Hi all,
Background:
I successfully extracted the m/z and ion mobility of MS1 from DDAPASEF data by timspy. Which was followed by the link below. https://github.com/MatteoLacki/timspy
The m/z and io…
Mnago updated
3 years ago
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Our machines produce Bruker `.tsf` raw files. I have very little experience with Bruker data file formats but how feasible is support for `.tsf` files within the current timsrust?