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lgatto
/
synapter
Label-free data analysis pipeline for optimal identification and quantitation
https://lgatto.github.io/synapter/
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magick_image_trim() error when building fragmentmatching.Rmd vignette on Ubuntu 20.04.4 LTS
#139
hpages
closed
1 year ago
1
Not sure an issue
#138
BaylorSci
opened
4 years ago
3
NEWS is old on bioc devel
#137
sgibb
closed
7 years ago
1
synapter 1.99 fails to build on bioc
#136
sgibb
closed
6 years ago
8
upload to bioc/merge conflicts
#135
sgibb
closed
7 years ago
4
grid search bug
#134
pavel-shliaha
closed
7 years ago
2
Which default value for `IisL`?
#133
sgibb
closed
7 years ago
5
create docs/ directory with pkgdown
#132
sgibb
closed
7 years ago
4
add .travis.yml
#131
sgibb
closed
7 years ago
1
flowchart of synergise2
#130
sgibb
closed
7 years ago
9
issue with synergise
#129
pavel-shliaha
closed
7 years ago
1
fm.fdr.nonunique seems not to work in synergise 2. Perhaps it does not override fm.minDelta?
#128
pavel-shliaha
closed
7 years ago
0
Document the columns in the files generated by `writeMatchedEMRTs`.
#127
sgibb
opened
7 years ago
1
modelIntensity and correctIntensities is counterintuitive
#126
sgibb
closed
7 years ago
1
add fragment/spectrum file to `show` output
#125
sgibb
closed
7 years ago
0
Vignette for synergise2
#124
sgibb
closed
7 years ago
0
regenerate synapterdata::synobj2 and create_synobj2.R
#123
sgibb
closed
7 years ago
12
increase class version to 2.0 and regenerate data/synapterTiny.rda
#122
sgibb
closed
7 years ago
3
Update synapter-package.Rd
#121
sgibb
closed
7 years ago
0
Replace hwriter report by knitr in synergize
#120
sgibb
closed
7 years ago
1
synergize2 needed?
#119
sgibb
closed
7 years ago
1
Data package of interest
#118
lgatto
opened
7 years ago
0
fix example in Synapter.Rd
#117
sgibb
closed
7 years ago
1
intensity normalisation by LOWESS
#116
pavel-shliaha
closed
7 years ago
21
add distribution of common fragments between master and all quant dataset
#115
pavel-shliaha
closed
7 years ago
3
bug in filterNonUniqueMatches
#114
pavel-shliaha
closed
8 years ago
1
problems with master construction
#113
pavel-shliaha
closed
8 years ago
3
Error: "The Pep3D file does not correspond to the given Quantitation Final Peptide file!"
#112
yajin2016
closed
8 years ago
5
unrecognized multiple matches in the grid search
#111
sgibb
closed
8 years ago
4
very strange performance function behaviour
#110
pavel-shliaha
closed
8 years ago
7
remove plotFragmentMatchingDiff from help
#109
pavel-shliaha
closed
8 years ago
0
rescueEMRTs should rescue everything
#108
sgibb
closed
8 years ago
2
bug of modelling function. Let user set max RT difference.
#107
pavel-shliaha
closed
8 years ago
12
converting an object from Synapter to MSnSet
#106
sgibb
closed
8 years ago
5
Ion mobility data supported
#105
hsiaoyi0504
closed
8 years ago
12
Adjustment of RT and mass windows
#104
lgatto
opened
8 years ago
0
Synapter 2.0 conf call
#103
lgatto
closed
8 years ago
1
why is fragment information non-redundant?
#102
pavel-shliaha
opened
8 years ago
2
plotFragmentMatching (): framgents from master database too low
#101
pavel-shliaha
closed
8 years ago
9
problem with making master
#100
pavel-shliaha
closed
8 years ago
0
Should we create sample names automatically?
#99
sgibb
closed
8 years ago
1
MSnBase complains
#98
pavel-shliaha
closed
8 years ago
5
question about memory allocation
#97
pavel-shliaha
closed
7 years ago
28
bug in new synapter while reading pep3D
#96
pavel-shliaha
closed
8 years ago
3
Are the "light" variants of writeMergedPeptides/writeMatchedEMRTs still needed?
#95
sgibb
closed
7 years ago
0
Confusing names
#94
pavel-shliaha
closed
8 years ago
2
perform rescue after transfer
#93
pavel-shliaha
closed
8 years ago
7
Code chunk plotcxseq in fragmentmatching vigette fails
#92
lgatto
closed
8 years ago
6
Error when compiling fragmentmatching vignette
#91
lgatto
closed
8 years ago
2
synapter bug
#90
pavel-shliaha
closed
8 years ago
1
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