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I am currently going through the MiXeR tutorial, which I plan to implement in my current study.
When I ran the python mixer.py ld and python mixer.py snp codes to generate.ld and.snp files, I kept …
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Dear Team,
I am calculating Partition heritability , but I am getting error of "parsing annotation error". Can you please help me with this? Here is my command:
GWAS trait: PASS.Bipolar_Disorder_AL…
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hi,
I have encountered a problem and had no idea why this happen.
Calling ./mtag.py \
--p-name pval \
--maf-min 0 \
--stream-stdout \
--n-min 0.0 \
--sumstats diabetes_new2.tsv,scz_new2.ts…
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Hi,
(ldsc13) [huawei@localhost DTI]$ /home/huawei/xb/mri_major_psychi/ldsc_master/ldsc.py --rg test.sumstats.gz,anhed.sumsta …
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Dear everyone,
When I run the partitioned heritability, there have some errors:
xiangbos-MacBook-Pro:ldsc_mod xiangbo$ python ldsc.py --h2 sleep.sumstats.gz --w-ld-chr /Users/xiangbo/mtag/mtag/lds…
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i am trying to find this file, where to download it?
https://data.broadinstitute.org/alkesgroup/LDSCORE/eur_w_ld_chr.tar.bz2
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Sorry, but the snp number in the baselineLD_v2.1_annots download from the Google Cloud can not match the one generated by the user.
ValueError: LD Scores for concatenation must have identical SNP c…
C0nc updated
8 months ago
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Hello,
I am running a cell type specific analysis with a modified baseline model where I added an extra category, it works when I use the summary statistics for one trait but crashes for other trai…
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I wanted to estimate genetic correlation between two binary trait, The summary statistics beta and se are based logistic regression. Their Zscores range are [-8.881,7.614], and [-4.398,5.029]. When I…
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Hi,
I'm running into the following error when attempting to run LDSC to get cell type-specific heritability estimates for 3 cell types:
```
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