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Hello, we have an inlab discussion about that, basically, that QUAL value is somehow directly related to the number of samples having variant sites.
In practice though, it doesn't seem to be the c…
ghost updated
4 years ago
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This is more a question about existing features than a new feature request; if these features are not already native to BEAST, then I imagine they'll have to be implemented in a plugin.
I'm using B…
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Hi,
In my cases, when I optimized GPy.model.GPRegression(kernel=RBF), I got different results
1. kernel variance (~0.00001) is smaller than Gaussian noise variance (~1) . What's the meaning of t…
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Due to a known memory leak when instantiating subclasses of SymEngine (one of our upstream dependencies) `Symbol` objects (see https://github.com/symengine/symengine.py/issues/379), running ESPEI with…
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Runs of the same code using different random seed values produce MCMC% of zero despite variability suggesting MCMC error is larger than reported relative to the Std. Error estimates. Problem or not?…
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summarize https://github.com/Data4DM/BayesSD/discussions/159 for introduction part of the paper. this paper will describe the last row and explain observations using simulation models
 modified fraction provided by tombo using the per-read statistic files produced by `tombo detect_modifications model_sample_compare` …
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Hi team,
When using BUSTED-PH/contrast-fel to detect directional selection pressure, I found the overall dn/ds values are significantly differed in foreground and background genes. However, the res…
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A wiki page summarizing the concept and giving a list of examples.
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Over the past few months, I have been working on an evaluation of the study design and data collection protocol used for spawning ground surveys of Columbia River chum at mainstem locations. The obje…