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**Describe the bug**
I've declared a slot as `required: true` in a class, then I've created a child class where I'm replacing that slot with a child slot. Marking in the child class the parent slot a…
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I am trying to use OntoGPT in a domain outside of bioinformatics. Presently trying something simple like extracting names of people from a given text.
I have a dumb question.
The values are pre…
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I like that we use **_linkML_** as part of the schema name, e.g. core-equipment.linkml.yaml. However, the use of "-" as space separation is not something we use in CIM. We are following the CamelCase …
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Running `make setup` fails when I get to gen-project at this line:
```
poetry run gen-project --config-file config.yaml -d project src/sepio_linkml/schema/sepio_linkml.yaml && mv project/*.py src/…
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> Hi everyone, thanks for all the effort you're putting in this project! I'm working on the extraction of events and arguments in a different domain, the legal and juridical one. In this domain resour…
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Currently only `gen-linkml` has `--materialize-patterns/--no-materialize-patterns` options to control whether `structured_pattern`s are materialized into actual `pattern`s. `gen-json-schema` should al…
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The AIRR Standard has a very rich set of metadata about how samples are processed for sequencing, including sample processing, cell processing, nucleic acid processing, and sequence data processing.
…
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**Describe the bug**
The LinkML JSON Schema generator = translates `custom data types` such as `rdf:langString` and specific URI-related types (`uri, uriorcurie`) always to `"type": "string"` types i…
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See https://linkml.io/linkml/schemas/linter.html#recommended
And the description should follow some agreed-upon style guidelines
```shell
linkml-lint src/mixs/schema/mixs.yaml | grep "does not …
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```shell
poetry run linkml-sqldb dump \
--db data_7.db \
--target-class Database \
--schema src/schema/nmdc.yaml data_7.json
```