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I did notice the other recent issue with the `link_recomb` function, but that seems to be separate to the issue I have encountered.
Essentially after running the following:
```
analysis_locus =…
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Hi, there:
the topr package is really nice.
I have a lot of GWAS which have columns such as **SNP A1 A2 BETA P**. However, it seems that topr demands the input file to have REF and ALT column …
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The number of exons plotted seems to be dependent on wether the legend is shown or not.
``` r
pacman::p_load(reprex)
pacman::p_load_gh("GenuityScience/topr")
data("R2_CD_UKBB")
# no legend…
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Hi Tota,
Great package!
I was trying to make a locuszoom style plot of a region where the strongest association signal has pvalues ~1e-400 . Since R can only represent values around ~1e-300 thi…
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locuszoom text for gwas catalog + ukbb is shown on top of conditional locuszoom and the ukbb gwas catalog is not showing at all!
e.g.
https://results.finngen.fi/region/T2D/10:69354950-69754950
an…
Fedja updated
8 months ago
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Hi I have an issue while trying to make a regional plot with my own LD vcf file, and the variants seem to have been incorrectly plotted in the bottom-left corner:
`mysumstats.plot_mqq(mode="r", build…
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Hi,
I am trying to use this great tool to create locuszoom plots. Will you guys provide GRch38 gencode list any soon as an update of the package?
Thank you
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https://mp.weixin.qq.com/s/syIZxkHLOPscSvPUMcvJJg
ixxmu updated
7 months ago
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To draw regional association plot for the lead variant of each replicated loci, we need to update the LocusZoom SQLite database to show the recombination rate and it hotspots in the plot for SNP with …
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`lz-aggregation-tests.min.js` is possible to plot burden test by `raremetal.js`, however it is too slow for big data.
Regenie is good for calculating UKB data for burden test, so is this possible f…