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Hello Patrick,
I have my protein alignments after Mafft in .fas format:
```
>WP_002656499.1
----------MSK-FFER------DDDIVALA-------TPFLSSALCVIRSS-------
----------GASSISKFSKI----FSNHSALNSASGNTIH…
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I am using flex 2.6.4. I compile with `-Ca`, following random advice on the Internet, because at some earlier juncture it solved some internal error. I also use:
%option debug noyywrap stack…
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Erika kindly extracted the data into a usable format. Might do some quick editing/culling first:
```
English,Français
collinearity,colinéarité
combinatorial method,méthode combinatoire
comparis…
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Hi, thanks for the great tool. When I try to use the command below,
'ilp_solver = cas.solver.ILPSolver(convergence_time_limit=500, maximum_potential_graph_layer_size=500, weighted=True, seed=1234)
…
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Hello. Pyjar appears to be causing a core dump. This may be related to this [issue](https://github.com/nickjcroucher/gubbins/issues/366). This was run on the cleaned output of Snippy from 104 _A. baum…
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There seems to be a large artefactual branch on BA.2.86.1 but actually being JN.1/2, when investigated I found it attracts seqs with no coverage around S:20.
@AngieHinrichs @yatisht
[usher](https…
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Which notes should be selected first? Biggest value? Oldest note?
Do we optimize for number of JoinSplits or something else?
What fee #1128 should be associated?
Used by z_sendmany and in future oth…
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Some comments on the manuscript in `https://github.com/marccanby/linguiphyr/blob/main/paper/paper.md?plain=1`
As a proviso, I'm a proponent of a very different framework (Bayesian approaches) and …
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## Keyword: sgd
### A Convergence Theory for Federated Average: Beyond Smoothness
- **Authors:** Authors: Xiaoxiao Li, Zhao Song, Runzhou Tao, Guangyi Zhang
- **Subjects:** Machine Learning (cs.LG);…
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I was running the modeltest-ng with the concated single copy gene as input, using the following command
```
modeltest-ng -d aa -i all.mafft.aln.trimmed.fa -o all_model -T raxml -p 136
```
However,…