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**Describe the parameter code you need**
Metabarcoding datasets usually come with relative abundances in terms of sequence reads per ASV or OTU. This is a request for terms for:
- Total abundanc…
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Dear author,
Thanks and cheers for developing this package!
I have the question as to how to use the package to download complete mitochondrial genomes from the NCBI. This is because I am going …
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## CALeDNA
Dataset link: https://ucedna.com/
Region: USA / California
Taxon: Eukaryotes
Type: occurrence
Why is this important: CALeDNA is a project / platform for citizen science eDNA metabarcod…
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From @laurabrenskelle: https://github.com/ioos/bio_data_guide/issues/265
> The [DNA-derived Data Extension page](https://ioos.github.io/bio_mobilization_workshop/edna-extension/) details how to use…
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Dear Till,
I hope you are well and that I am not bothering you too much. I am working on DNA metabarcoding of the stomach contents of Atlantic bluefin tuna by amplifying partial fragments of the COI …
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`DESeq2` is a package design to use it for RNAseq data, but also you can use this library with metabarcoding data. I want to use `DESeq2` package to find OTUs that differ in categorical variables. The…
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For this week, pick two class mates' repositories, review, and post two issues in their repo that does one (or more) of the following:
1) ask questions that you might have
2) point out something you…
sr320 updated
3 years ago
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Hi @VascoElbrecht
I hope everything's going well!
I have been using PrimerMiner to develop some specific and metabarcoding primers, so I've been using some Geneious fasta files that I already h…
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I'm finding your code and KernelBiome very useful for modeling with metabarcoding data. I'd like to also incorporate other metadata about the samples in the model, such as sampling site as a category …
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What types of data visualizations would be useful for the analysis or interpretation of your microbial ecology or metabarcoding datasets? We want ideas for data visualizations that would be useful for…