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Hi,
I was wondering if there are surface files (such as giftis or freesurfer surfs) for the volumetric MNI templates. I've seen some in various packages but I haven't come across an archive that co…
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Currently, ICA-AROMA only supports standard-space inputs (MNI152 with 2mm3 voxels, I believe). In order to maximize compatibility with other ICA classification methods (e.g., `tedana`), we need to sup…
tsalo updated
2 years ago
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Hi Kirstie,
Thanks for thse great scripts.
I am able to organize my data (as instructed in https://github.com/HappyPenguin/DTI_PROCESSING/wiki/Getting-Started) such that I can run wrapper.sh (or dti_…
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Hey,
I created `FSL-6.0.2-foss-2019a-Python-3.7.2.eb` as a copy from the currently available old toolchain 6.0.2 release and ran into problems, since `fslpython` stuff is included in `$PATH` and `$…
crubb updated
3 years ago
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I'm using this:
scripts/tf/register.py --moving t1_mni.nii.gz --fixed MNI152_T1_1mm_brain.nii.gz --moved t1_mni_voxelmorph.nii.gz --model vxm_dense_brain_T1_3D_mse.h5
t1_mni.nii.gz is a affined i…
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Hello. We are running HCPpipeline `docker://bids/hcppipelines:v4.1.3-1`. When we feed t1w and t2w input file, we run into the following error message.
```
Fri Feb 18 18:17:36 EST 2022:T2wToT1wReg.…
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there exist a few references to regions, which does not exist in parcellation region definition:
```
Following regions in maps/colin27-jba31-labelled.json have no correspondence in parcellation mi…
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```
Image Exception : #63 :: No image files match: NONE
terminate called after throwing an instance of 'std::runtime_error'
what(): No image files match: NONE
/home/qwbrain/HCPpipelines/global/…
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Hi!
Just writing a warning for the next releases.
I just noticed that most of the paths of the test files are absolute paths so with the updates some tests might not work anymore. I am especiall…
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v18 (has the current hierarchy of the brain areas stated in the "ontology" JSON):
Amunts, K., Eickhoff, S. B., Caspers, S., Bludau, S., & Mohlberg, H. (2019). Whole-brain parcellation of the JuBrain …