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Hello,
I am following [this](https://morris-lab.github.io/CellOracle.documentation/notebooks/02_motif_scan/02_atac_peaks_to_TFinfo_with_celloracle_20200801.html) tutorial to obtain a base GRN, with…
acv21 updated
3 weeks ago
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I'm sorry for submitting an issue here.
I tried to download these databases using zsync.
https://resources.aertslab.org/cistarget/databases/homo_sapiens/hg38/screen/mc_v10_clust/region_based/hg38_…
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Would be good to introduce motifs that are a mixture of chords and melody.
Actually, the chordal motifs are a little hit and miss sometimes. Maybe something to look into
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When I run this command : tfi.scan(fpr=0.02,motifs=None, verbose=True)
Error reported as follows ： The Kernel crashed while executing code in the current cell or a previous cell.
So I do it in b…
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Started using [stumpy](https://stumpy.readthedocs.io/en/latest/)
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Greetings,
I am not sure if this is currently possible, but it would be great to allow MSFragger-Glyco (N-linked workflows) to assign glycans to peptides with a motif that is not N-X-S/T. It would…
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- motifs
- modules
- subnetworks
- complexes
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Pour l'instant, Mobility intègre un [modèle de radiation universel](https://mobility.readthedocs.io/en/latest/radiation_model.html) uniquement mis en application pour les déplacements domicile-travail…
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Dear Idan,
When running CoMoVa algorithm on a symetric motif: DRHCCRXYGGDYH (I used DRHCCRNNNNNNNNYGGDYH for the background)
CoMoVa yield the following error message:
* erreur date de naissance
* numéro de licence ne correspondant pas à l inscription
* erreur discipline
* manque la mention "…