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Hi team 👋
Thanks for the wonderful tool!
I am exploring a use-case for DVC along with other tools which I rely upon in my projects and was wondering whether there's a way to customize the tempo…
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What data formats/options do DaSH attendees see sending as 'raw reads' to NMDP? FASTA? FASTQ? Done as an HML message payload or external link? If URI, where will the data live? For how long?
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It has been suggested we work on support for cold storage in the DRS specification. Ahead of submitting a pull request for this. It seems worth laying out some of the considerations for support of col…
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I'm opening this issue here because I believe it's more of a pufferfish-related matter, but will use the issue template from your salmon repository.
**Is the bug primarily related to salmon (bulk m…
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This issue imported from the [Chado v1.4 requested changes](https://docs.google.com/document/d/1t_Jb4XxUPtgGRSKtznsqvjTjmR4vpFHPQROMQ0OZK9A/edit) google doc:
Requests by Andrew Farmer
http://gmo…
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Hi,
I am having issues with the output of the fasterq-dump command and I find it very unreliable. For example when downloading accession GSM4710468 SRR12386359 with fasterq-dump the output will be …
ab4cp updated
4 weeks ago
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Hi, thank you for developing the great tool. I have been trying to run TRUST4 on all 10X data downloaded from NCBI sequence read archive (SRA). Things have been smooth when the libraries were sequence…
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I followed the instructions in the Wiki to build (compile) and install the SRA Toolkit, but the install process failed with the following error message (last 13 lines of stderr shown):
```
...
CM…
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### Deep Learning Simplified Repository (Proposing new issue)
:red_circle: **Project Title** : Understanding Microbial Interactions Using Graph Neural Networks
:red_circle: **Aim** : The aim of thi…