ncbi sra-tools issues - Githubissues

ncbi / sra-tools

SRA Tools

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fasterq-dump into six files?

#944 jeongyeonkim95 opened 5 hours ago
0
error code 3 for some nanopore datasets

#943 yfukasawa opened 4 days ago
1
Issue with `--max-size u` Argument in Prefetch

#942 ChongLC closed 1 week ago
4
Vdb 5625

#941 klymenko closed 1 week ago
0
Unresolved dependencies with prefetch followed by fatal segmentation fault error

#940 guester opened 2 weeks ago
1
failed to download ncbi-acc

#939 tzhu-bio closed 5 days ago
1
VDB-5645

#938 durbrow closed 1 month ago
0
3.1.1 build failure on macOS and Linux

#937 mjsteinbaugh closed 2 weeks ago
6
vdb-config

#936 anjilsri opened 1 month ago
1
`--fasta-unsorted` causes fasterq-dump to quit with error code 3

#935 linsalrob closed 31 minutes ago
1
Incosistencies with retrieving SRX data from different sources

#934 nasjr08 closed 1 month ago
3
Vdb 5609

#933 klymenko closed 1 month ago
0
Problem to split fastq files downloaded manually in SRA

#932 ThibauldMichel closed 1 month ago
1
Truncated NCBI fastq zipped files Error

#931 gargtanvi2309 closed 1 month ago
8
srapath failed to resolve accession

#930 ndrubins closed 2 months ago
1
fasterq-dump unable to convert sra file to fasta

#929 krisma2002 closed 2 months ago
2
Problem of fasterq dump --split-3 in Ubuntu(v 3.10.0), error in Quality score expression, different in macOS(v 3.0.1/v 3.1.0)

#928 Jyi-Yang closed 2 months ago
3
`fastq-dump` `split-3` cannot generate index file correctly

#927 jiangpuxuan closed 2 months ago
5
Vdb 5583

#926 aboshkin closed 1 month ago
0
Issue downloading small files

#925 tiffanyseale closed 3 months ago
1
fasterq-dump.3.1.0 err: the input data is missing the QUALITY-column

#924 moldovannorbert closed 3 months ago
1
<spam>

#923 Natthaphonkanchaisri closed 3 months ago
0
Vdb 5587

#922 klymenko closed 3 months ago
0
disk-limit exeeded! fasterq-dump quit with error code 3

#921 brycemash closed 3 months ago
2
prefetch - failed to verify error

#920 uasic opened 3 months ago
26
Proxy error after setting up DNS server in tool configuration

#919 CHANayechan closed 1 month ago
1
fasterq-dump SRR2165675.sra err: fastq.splitted.half1 row #103272334 : CMP_READ.len(0) != Q1.len(101) / spotlen=202

#918 sharjeelchaudhry1 closed 3 months ago
1
make_joined_filename() with fasterq-dump

#917 rchikhi closed 3 months ago
5
Issues downloading with fasterq-dump

#916 bnovak32 closed 3 months ago
6
VDB-5542: Removing reads that are subsequences of other reads

#915 shk656461 opened 3 months ago
0
Vdb 5400

#914 klymenko closed 3 months ago
0
Is it common for long-read samples to have different headers and orders, even though all reads are present?

#913 AnupamGautam closed 3 months ago
1
Vdb 5596

#912 klymenko closed 3 months ago
0
prefetch could not download data

#911 lxzzzzzzzzzzzzzzzzzzzz closed 3 months ago
3
question about fastq-dump

#910 Flu09 closed 3 months ago
1
fasterq-dump error

#909 linsson closed 3 months ago
2
s3://sra-pub-src-10/SRR1951834/111216_I282_FCC06U5ACXX_L4_CITuqgTABRAAPEI-17_2.fq.gz

#908 xixie31 closed 4 months ago
0
Vdb 5532

#907 klymenko closed 4 months ago
0
err: insp_get_file_size

#906 VikArz02 closed 5 months ago
1
Prefetch SSL Certificate Verification Error in NCBI SRA Toolkit

#905 angerray opened 5 months ago
5
fasterq-dump unmated reads

#904 cgob closed 3 months ago
3
fasterq-dump overloads memory

#903 mfansler opened 5 months ago
7
fasterq-dump quit with error code 3; err: the input data is missing the QUALITY-column

#902 huang-juanjuan opened 5 months ago
0
VDB-5546

#901 durbrow closed 5 months ago
0
fasterq-dump fails with `Failed to call external services.`

#900 paulahsan closed 4 months ago
1
fasterq-dump: cannot create this file, full path is changed with `_1` and `_2`

#899 lindenb opened 5 months ago
1
Read names not normal

#898 vappiah closed 3 months ago
1
how to download only SRA Normalized Format files with full base quality scores using Prefetch

#897 Balu-Anupoju-Vt closed 4 months ago
3
`vdb-validate` does not detect file corruption

#896 suhrig closed 4 months ago
12
original format fastq files

#895 sherinesaber closed 1 month ago
2