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sra-tools
SRA Tools
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`--quiet` flag does not work for prefetch
#894
amstilp
closed
5 months ago
2
Vdb 5529
#893
durbrow
closed
5 months ago
0
why sra file is much large then decompressed fastq file?
#892
yhg926
closed
6 months ago
2
fasterq-dump quit with error code 3, but no error is given
#891
vini8cs
closed
4 months ago
6
How to check the integrity of BAM and FASTQ files after conversion
#890
zhuchcn
opened
6 months ago
4
Numerous scRNA-seq Datasets Having Potential Corruption Issues Upon Conversion to .SRA Format
#889
Sandman-1
opened
6 months ago
1
SRAO-831: Update pacbio defline patterns
#888
shk656461
closed
6 months ago
0
Issue with running SRA Toolkit, fastq-dump
#887
big-boo1
closed
6 months ago
1
SRAO-613: Added telemetry and memory prediction
#886
shk656461
closed
6 months ago
0
fastq-dump error in MacOs
#885
nana-marinbio
opened
7 months ago
0
prefetch not working, no error message
#884
m-neuhoff
closed
7 months ago
1
`--eliminate-quals` issue in `prefetch`
#883
padix-key
closed
1 month ago
4
Failed to call external services.
#882
jestlin15
closed
7 months ago
2
VDB-5407 increased internal page size from 256K to 1024K
#881
aboshkin
closed
7 months ago
0
vdb-config, not working sratoolkit
#880
gungil07
closed
4 months ago
2
SRR10202214
#879
apredeus
closed
5 months ago
1
fastq-dump error code 3 with no cache and plenty of space?
#878
apredeus
closed
7 months ago
1
VDB-5484
#877
durbrow
closed
7 months ago
0
SRAO-721: 'sharq' slows down for very large files
#876
shk656461
closed
6 months ago
1
SRAO-652: Support for 64-bit reads in spot assembly mode; paralellizi…
#875
shk656461
closed
6 months ago
1
fasterq-dump error
#874
yingqizhang
closed
3 months ago
1
prefetch not downloading phenotype files with SRA toolkit v3.0.7
#873
kevin198930
closed
4 months ago
14
VDB-5282
#872
durbrow
closed
7 months ago
0
Update BitMagic to 7.13.4
#871
durbrow
closed
8 months ago
0
prefetch issue
#870
bugandong
closed
6 months ago
2
Fasterq-dump downloading temp files more than double the size of the original FASTQ files.
#869
Vishnu-Prasad-O
opened
8 months ago
0
Vdb 5442
#868
durbrow
closed
8 months ago
0
Where's The Documentation on SRA Tools Commands?
#867
felixm3
closed
8 months ago
1
Using the same version of sratoolkit generates different data sizes
#866
yanpinlu
closed
6 months ago
15
fasterq-dump fails due to output file naming error
#865
dmalzl
opened
8 months ago
8
Can not use Aspera in perfetch command
#864
HowcanIwriteCode
closed
8 months ago
1
Description of SRA archive file layout
#863
noamteyssier
closed
2 months ago
10
Issue with Downloading more than 1000 files
#862
kcmtest
closed
8 months ago
8
fasterq-dump does not produce expected files
#861
jacobHog
closed
8 months ago
2
Vdb 5439
#860
aboshkin
closed
8 months ago
0
can't prefetch from AWS instance
#859
Bu-fetch
closed
9 months ago
2
Vdb 5393
#858
aboshkin
closed
8 months ago
0
SRAO-657
#857
shk656461
closed
9 months ago
0
Clarification on fasterq-dump usage
#856
apredeus
closed
9 months ago
8
Prefetch finished with no error
#855
Wang0293
closed
8 months ago
10
consider adding a flake.nix
#854
MatrixManAtYrService
opened
9 months ago
0
VDB-5412
#853
durbrow
closed
9 months ago
0
CentOS binaries: `dump-ref-fasta` executable built only(?) for CentOS (>= 8)
#852
HenrikBengtsson
opened
9 months ago
3
"fasterq-dump.3.0.7 err: the input data is missing the QUALITY-column" BUT sra QUALITY column is present.
#851
GabeAl
opened
9 months ago
1
Vdb 5408
#850
durbrow
closed
9 months ago
0
fasterq cannot extract FASTQ or FASTA after prefetch
#849
vicontfreetime
opened
9 months ago
1
fasterq-dump --split-files SRR1718500 paired reads have different names
#848
achristofferson-bbi
closed
7 months ago
3
how can I export to PATH
#847
mick42-star
closed
9 months ago
2
fasterq-dump Error
#846
NanoCoreUSA
opened
10 months ago
0
sam-dump : database incorrect while opening manager within database module
#845
aledavini7
closed
9 months ago
6
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