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sra-tools
SRA Tools
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vdb-config: use AWS IAM role instead of credentials file
#945
peter-sandor-1992
opened
1 day ago
0
fasterq-dump into six files?
#944
jeongyeonkim95
opened
4 days ago
1
error code 3 for some nanopore datasets
#943
yfukasawa
opened
1 week ago
1
Issue with `--max-size u` Argument in Prefetch
#942
ChongLC
closed
1 week ago
4
Vdb 5625
#941
klymenko
closed
2 weeks ago
0
Unresolved dependencies with prefetch followed by fatal segmentation fault error
#940
guester
opened
3 weeks ago
1
failed to download ncbi-acc
#939
tzhu-bio
closed
1 week ago
1
VDB-5645
#938
durbrow
closed
1 month ago
0
3.1.1 build failure on macOS and Linux
#937
mjsteinbaugh
closed
3 weeks ago
6
vdb-config
#936
anjilsri
opened
1 month ago
1
`--fasta-unsorted` causes fasterq-dump to quit with error code 3
#935
linsalrob
closed
4 days ago
1
Incosistencies with retrieving SRX data from different sources
#934
nasjr08
closed
1 month ago
3
Vdb 5609
#933
klymenko
closed
2 months ago
0
Problem to split fastq files downloaded manually in SRA
#932
ThibauldMichel
closed
1 month ago
1
Truncated NCBI fastq zipped files Error
#931
gargtanvi2309
closed
1 month ago
8
srapath failed to resolve accession
#930
ndrubins
closed
2 months ago
1
fasterq-dump unable to convert sra file to fasta
#929
krisma2002
closed
2 months ago
2
Problem of fasterq dump --split-3 in Ubuntu(v 3.10.0), error in Quality score expression, different in macOS(v 3.0.1/v 3.1.0)
#928
Jyi-Yang
closed
2 months ago
3
`fastq-dump` `split-3` cannot generate index file correctly
#927
jiangpuxuan
closed
3 months ago
5
Vdb 5583
#926
aboshkin
closed
1 month ago
0
Issue downloading small files
#925
tiffanyseale
closed
3 months ago
1
fasterq-dump.3.1.0 err: the input data is missing the QUALITY-column
#924
moldovannorbert
closed
3 months ago
1
<spam>
#923
Natthaphonkanchaisri
closed
3 months ago
0
Vdb 5587
#922
klymenko
closed
3 months ago
0
disk-limit exeeded! fasterq-dump quit with error code 3
#921
brycemash
closed
3 months ago
2
prefetch - failed to verify error
#920
uasic
opened
3 months ago
26
Proxy error after setting up DNS server in tool configuration
#919
CHANayechan
closed
1 month ago
1
fasterq-dump SRR2165675.sra err: fastq.splitted.half1 row #103272334 : CMP_READ.len(0) != Q1.len(101) / spotlen=202
#918
sharjeelchaudhry1
closed
3 months ago
1
make_joined_filename() with fasterq-dump
#917
rchikhi
closed
3 months ago
5
Issues downloading with fasterq-dump
#916
bnovak32
closed
3 months ago
6
VDB-5542: Removing reads that are subsequences of other reads
#915
shk656461
opened
3 months ago
0
Vdb 5400
#914
klymenko
closed
3 months ago
0
Is it common for long-read samples to have different headers and orders, even though all reads are present?
#913
AnupamGautam
closed
3 months ago
1
Vdb 5596
#912
klymenko
closed
3 months ago
0
prefetch could not download data
#911
lxzzzzzzzzzzzzzzzzzzzz
closed
4 months ago
3
question about fastq-dump
#910
Flu09
closed
3 months ago
1
fasterq-dump error
#909
linsson
closed
3 months ago
2
s3://sra-pub-src-10/SRR1951834/111216_I282_FCC06U5ACXX_L4_CITuqgTABRAAPEI-17_2.fq.gz
#908
xixie31
closed
4 months ago
0
Vdb 5532
#907
klymenko
closed
4 months ago
0
err: insp_get_file_size
#906
VikArz02
closed
5 months ago
1
Prefetch SSL Certificate Verification Error in NCBI SRA Toolkit
#905
angerray
opened
5 months ago
5
fasterq-dump unmated reads
#904
cgob
closed
4 months ago
3
fasterq-dump overloads memory
#903
mfansler
opened
5 months ago
7
fasterq-dump quit with error code 3; err: the input data is missing the QUALITY-column
#902
huang-juanjuan
opened
5 months ago
0
VDB-5546
#901
durbrow
closed
5 months ago
0
fasterq-dump fails with `Failed to call external services.`
#900
paulahsan
closed
4 months ago
1
fasterq-dump: cannot create this file, full path is changed with `_1` and `_2`
#899
lindenb
opened
5 months ago
1
Read names not normal
#898
vappiah
closed
4 months ago
1
how to download only SRA Normalized Format files with full base quality scores using Prefetch
#897
Balu-Anupoju-Vt
closed
4 months ago
3
`vdb-validate` does not detect file corruption
#896
suhrig
closed
4 months ago
12
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