-
INFO: Annovar reference files of build hg19 were given, using this build for all analysis.
INFO: Begin.
INFO: Proper directory already exists. Continue.
INFO: Proper directory already exists. Conti…
-
First My vcf is annotated by VEP in docker and my command:
./vep -i /opt/vep/.vep/maf2vcf/ACC-US-t.vcf --offline --format vcf --symbol --terms SO --vcf --plugin Downstream --plugin Wildtype -o /op…
-
Hi~
I have run STAR-fusion in two different mode (directly use fastq files and Kickstart mode). When I compare results from these different modes, I find the result is quite different.So,which mode…
-
Hello, I am working with VCF data called with GATK using hg19.
Now, when using VEP, I use the Grch37 reference (number 174), as they should be identical minus the MT genes.
I run VEP with the foll…
-
Hi Brian,
Thanks for all the help so far.
I've run star-fusion successfully in my sample. But I wonder why some fusion pairs do not have fusion cds in the file . Could you explain more clearly …