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We decided to store volumetric data in the NIfTI1 format, because the volumes can store spatial orientation data (as a transform), and be loaded natively into slicer. I'm not quite sure how to impleme…
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### What feature or change would you like to see made?
Hello!
Currently cornerstoneNiftiVolumeLoader cannot load nifti files with datatypeCode = 2 (uint8): it throws the following error:
`8 Bit s…
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### Description
When trying to load a NIFTI with type FLOAT64, the error message `"Unknown data type: datatypeCode: 64"` is shown. This is surprising, as it seems as most of the code of the NIFTI par…
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# Tutorials for manipulating neuroimaging data in Python
## Project Description
A large number of file formats used in neuromaging analysis have Python support (many of them in [nibabel](https:/…
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Slicer 4.10.0.
After importing 4D nifti using multi-volume importer, multi-volume can only be saved as nrrd/nhdr (attached screenshot), not other format.
What I was trying to do is to import 4D n…
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Especially for specific data formats like nifti
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It is really great work of this repository.
I just wonder could you provide the detail code which convert dicom or nifti file( or any file format) to HDF5 format. It is really helpful for me to con…
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Gist of dicom data in python
https://towardsdatascience.com/dealing-with-dicom-using-imageio-python-package-117f1212ab82
Gist of NIfTI data in julia and python
https://brainder.org/2012/09/23/th…
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Hi - My goal is to view a local nifti file (.nii) on the neuroglancer demo appspot. So, I made a directory and placed the file in it, then ran [cors_webserver.py](https://github.com/google/neuroglance…
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Hi,
I am trying to convert tiff images into the required nifti format using the following function:
https://github.com/MIC-DKFZ/nnUNet/blob/06505439d5e3239105c867c6b380a95f44090431/nnunet/utilit…