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Hi,
I am running run_colocation to identifying cellular compartments / tissue zones using matrix factorisation (NMF). For the plots generated by plot_cell_type_loadings(), It is said that "Shown are …
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NMF Synchronizations are used to implement the synchronization between the two versions of the data model involved in each scenario. Two solutions are provided: a specific one, where overlaps between …
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Hi,
I was wondering about the match sets you are using in the solution. Each graph pattern in the case study defines a query, a repair action and a match set---i.e. a set of elements that should be r…
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Hi @stefaniebutland !
Eli has restarted the the nmfs-openscapes Project Board. Would you be able to do some further set up to match what has worked for us for Openscapes and NASA Openscapes? To start…
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This issue tracks rolling out 'per user home directory quotas' as an initiative within the product & services team.
## Team
- Person responsible for this currently - @sgibson91 (TBD, based on a clea…
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Hi,
Nice work! I have a question that when I calculate the meta-program, do I need to do batch correction first. For example, I first perform NMF on multiple samples individually. The meta-progra…
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Hi,
Is there any python code to validate the NMF topics like intertopic distance.
Please share the code.
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Hi, Im having some issues with the above command. Hope you can help. Any ideas you had would be very useful.
When running the following command
> denovo_signatures NMF::nmf - 20/20 fit(s) threw …
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All the different methods initializers are calling the initializer of the parent class. For example, [here](https://github.com/scicubator/nimfa/blob/master/nimfa/methods/factorization/nmf.py#L162):
`n…
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Hi,
I'm having trouble running NMF on a large matrix of 3000 genes and 1428 samples (3000x1428 matrix). A few lines of the error I get is this:
`AAML1031_rna_nmf